JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CORO7_chr16_4349542_4421596	0/0	c0009	2778	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0010	2778	1	0	0	1	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0011	2778	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0012	2778	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0013	2778	1	0	0	1	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0014	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0015	2778	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0016	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0017	2778	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0018	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0019	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0020	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0021	2778	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0022	2778	1	0	1	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0023	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0024	2778	1	1	0	0	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0025	2778	1	0	0	0	0	1	copy fasta	CORO7	chr16	4349542	4421596
CORO7_chr16_4349542_4421596	0/0	c0026	2778	1	0	0	1	0	0	copy fasta	CORO7	chr16	4349542	4421596
CORT_chr1_10445031_10456998	0/0	c0001	318	216	83	46	61	7	19	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/1	c0002	318	143	1	19	94	7	21	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	1/0	c0003	318	66	14	12	27	2	10	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	c0004	318	1	0	0	1	0	0	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	c0005	318	1	0	0	1	0	0	copy fasta	CORT	chr1	10445031	10456998
CORT_chr1_10445031_10456998	0/0	c0006	318	1	0	1	0	0	0	copy fasta	CORT	chr1	10445031	10456998
COTL1_chr16_84560596_84623078	1/1	c0001	429	436	98	72	204	16	44	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	c0002	429	2	0	0	2	0	0	copy fasta	COTL1	chr16	84560596	84623078
COTL1_chr16_84560596_84623078	0/0	c0003	429	2	0	0	0	0	2	copy fasta	COTL1	chr16	84560596	84623078
COX10_chr17_14064504_14213677	0/0	c0001	1332	49	9	8	25	2	5	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0002	1332	40	13	7	14	2	4	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0003	1332	38	9	9	16	1	3	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	1/0	c0004	1332	32	11	7	9	1	3	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0005	1332	30	2	6	19	1	2	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0006	1332	25	2	10	8	3	2	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0007	1332	20	6	5	3	0	6	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0008	1332	18	8	1	8	1	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0009	1332	13	1	9	3	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0010	1332	12	0	0	12	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0011	1332	6	0	1	2	1	2	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0012	1332	4	3	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0013	1332	4	0	0	4	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0014	1332	4	0	0	4	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0015	1332	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0016	1332	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0017	1332	3	0	0	2	0	1	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0018	1332	3	3	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0019	1332	3	2	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0020	1332	2	2	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0021	1332	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0022	1332	1	0	0	0	0	1	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0023	1332	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677