JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COX10_chr17_14064504_14213677	0/0	c0024	1332	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0025	1332	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0026	1332	1	1	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0027	1332	1	0	1	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0028	1332	1	0	0	1	0	0	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/0	c0029	1332	1	0	0	0	0	1	copy fasta	COX10	chr17	14064504	14213677
COX10_chr17_14064504_14213677	0/1	c0030	1332	1	0	0	0	0	0	copy fasta	COX10	chr17	14064504	14213677
COX11_chr17_54955422_54973654	1/1	c0001	831	434	92	72	206	12	50	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	c0002	831	1	1	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX11_chr17_54955422_54973654	0/0	c0003	831	1	1	0	0	0	0	copy fasta	COX11	chr17	54955422	54973654
COX14_chr12_50107236_50125453	1/1	c0001	174	418	96	80	188	12	40	copy fasta	COX14	chr12	50107236	50125453
COX15_chr10_99705868_99737127	1/1	c0001	1233	414	88	80	186	14	44	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	c0002	1233	3	3	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	c0003	1233	2	0	0	2	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	c0004	1233	1	1	0	0	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	c0005	1233	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX15_chr10_99705868_99737127	0/0	c0006	1233	1	0	0	1	0	0	copy fasta	COX15	chr10	99705868	99737127
COX16_chr14_70320081_70364683	1/1	c0001	321	375	80	68	171	8	46	copy fasta	COX16	chr14	70320081	70364683
COX16_chr14_70320081_70364683	0/0	c0002	321	1	0	0	1	0	0	copy fasta	COX16	chr14	70320081	70364683
COX17_chr3_119664532_119682406	1/1	c0001	192	419	86	70	201	14	46	copy fasta	COX17	chr3	119664532	119682406
COX17_chr3_119664532_119682406	0/0	c0002	192	1	0	0	1	0	0	copy fasta	COX17	chr3	119664532	119682406
COX18_chr4_73047362_73074716	1/1	c0001	1005	261	57	53	120	11	18	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0002	1005	105	21	17	48	3	16	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0003	1005	6	0	0	6	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0004	1005	3	3	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0005	1005	3	0	0	0	0	3	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0006	1005	2	2	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0007	1005	1	0	1	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0008	1005	1	1	0	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0009	1005	1	0	1	0	0	0	copy fasta	COX18	chr4	73047362	73074716
COX18_chr4_73047362_73074716	0/0	c0010	1005	1	0	0	0	0	1	copy fasta	COX18	chr4	73047362	73074716
COX19_chr7_959852_980549	1/1	c0001	273	430	96	78	190	16	48	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	c0002	273	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX19_chr7_959852_980549	0/0	c0003	273	1	1	0	0	0	0	copy fasta	COX19	chr7	959852	980549
COX20_chr1_244830658_244850057	1/1	c0001	357	272	64	58	103	9	36	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	c0002	357	19	18	1	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	c0003	357	3	0	0	3	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	c0004	357	2	0	1	0	1	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	c0005	357	1	1	0	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX20_chr1_244830658_244850057	0/0	c0006	357	1	1	0	0	0	0	copy fasta	COX20	chr1	244830658	244850057
COX4I1_chr16_85794695_85812068	0/1	c0001	510	331	77	58	147	14	34	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	c0002	510	83	8	7	60	2	6	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	1/0	c0003	510	11	10	0	0	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	c0004	510	3	2	1	0	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	c0005	510	2	0	0	2	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	c0006	510	1	1	0	0	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I1_chr16_85794695_85812068	0/0	c0007	510	1	0	0	1	0	0	copy fasta	COX4I1	chr16	85794695	85812068
COX4I2_chr20_31632912_31650006	1/1	c0001	516	277	83	58	81	13	40	copy fasta	COX4I2	chr20	31632912	31650006
COX4I2_chr20_31632912_31650006	0/0	c0002	516	22	11	8	0	1	2	copy fasta	COX4I2	chr20	31632912	31650006
COX4I2_chr20_31632912_31650006	0/0	c0003	516	1	0	0	1	0	0	copy fasta	COX4I2	chr20	31632912	31650006