JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
COX5A_chr15_74914791_74943073	1/1	c0001	453	426	90	78	197	16	43	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	c0002	453	1	0	0	0	0	1	copy fasta	COX5A	chr15	74914791	74943073
COX5A_chr15_74914791_74943073	0/0	c0003	453	1	0	0	1	0	0	copy fasta	COX5A	chr15	74914791	74943073
COX5B_chr2_97641062_97653383	1/1	c0001	390	345	96	56	134	14	43	copy fasta	COX5B	chr2	97641062	97653383
COX5B_chr2_97641062_97653383	0/0	c0002	390	1	0	0	0	0	1	copy fasta	COX5B	chr2	97641062	97653383
COX6A1_chr12_120433113_120445730	1/1	c0001	330	426	98	80	190	14	42	copy fasta	COX6A1	chr12	120433113	120445730
COX6A2_chr16_31422731_31433360	1/1	c0001	294	387	85	64	184	15	37	copy fasta	COX6A2	chr16	31422731	31433360
COX6A2_chr16_31422731_31433360	0/0	c0002	294	25	7	2	12	1	3	copy fasta	COX6A2	chr16	31422731	31433360
COX6B1_chr19_35643323_35663782	1/1	c0001	261	344	76	68	147	13	38	copy fasta	COX6B1	chr19	35643323	35663782
COX6B1_chr19_35643323_35663782	0/0	c0002	261	94	20	12	53	1	8	copy fasta	COX6B1	chr19	35643323	35663782
COX6B1_chr19_35643323_35663782	0/0	c0003	261	1	1	0	0	0	0	copy fasta	COX6B1	chr19	35643323	35663782
COX6B1_chr19_35643323_35663782	0/0	c0004	261	1	1	0	0	0	0	copy fasta	COX6B1	chr19	35643323	35663782
COX6B2_chr19_55344704_55359719	1/1	c0001	267	385	89	68	166	14	46	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	c0002	267	3	3	0	0	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	c0003	267	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6B2_chr19_55344704_55359719	0/0	c0004	267	1	0	0	1	0	0	copy fasta	COX6B2	chr19	55344704	55359719
COX6C_chr8_99872865_99898707	1/1	c0001	228	257	39	53	111	15	37	copy fasta	COX6C	chr8	99872865	99898707
COX6C_chr8_99872865_99898707	0/0	c0002	228	99	51	15	23	3	7	copy fasta	COX6C	chr8	99872865	99898707
COX7A1_chr19_36145922_36157447	1/1	c0001	240	466	100	84	212	18	50	copy fasta	COX7A1	chr19	36145922	36157447
COX7A2L_chr2_42344338_42366217	1/1	c0001	345	390	91	68	167	16	46	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	c0002	345	7	0	0	7	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	c0003	345	5	0	0	5	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	c0004	345	2	0	0	2	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	c0005	345	1	0	0	1	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2L_chr2_42344338_42366217	0/0	c0006	345	1	1	0	0	0	0	copy fasta	COX7A2L	chr2	42344338	42366217
COX7A2_chr6_75232787_75248801	1/1	c0001	252	380	86	60	188	12	32	copy fasta	COX7A2	chr6	75232787	75248801
COX7A2_chr6_75232787_75248801	0/0	c0002	252	2	0	0	2	0	0	copy fasta	COX7A2	chr6	75232787	75248801
COX7B2_chr4_46729827_46914245	1/1	c0001	246	298	73	52	131	10	30	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	c0002	262	1	0	0	1	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B2_chr4_46729827_46914245	0/0	c0003	246	1	1	0	0	0	0	copy fasta	COX7B2	chr4	46729827	46914245
COX7B_chrX_77894468_77912376	1/1	c0001	243	290	68	46	129	11	34	copy fasta	COX7B	chrX	77894468	77912376
COX7B_chrX_77894468_77912376	0/0	c0002	243	4	4	0	0	0	0	copy fasta	COX7B	chrX	77894468	77912376
COX7C_chr5_86612941_86625962	1/1	c0001	192	411	96	72	177	16	48	copy fasta	COX7C	chr5	86612941	86625962
COX7C_chr5_86612941_86625962	0/0	c0002	192	1	0	0	1	0	0	copy fasta	COX7C	chr5	86612941	86625962
COX8A_chr11_63969620_63981543	1/1	c0001	210	311	73	68	116	12	40	copy fasta	COX8A	chr11	63969620	63981543
COX8A_chr11_63969620_63981543	0/0	c0002	210	24	16	0	8	0	0	copy fasta	COX8A	chr11	63969620	63981543
COX8A_chr11_63969620_63981543	0/0	c0003	210	1	1	0	0	0	0	copy fasta	COX8A	chr11	63969620	63981543
COX8C_chr14_93342182_93353356	0/1	c0001	219	410	84	71	202	16	36	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	c0002	219	12	10	2	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	c0003	219	1	0	1	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	c0004	230	1	1	0	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	c0005	219	1	0	0	1	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	c0006	219	1	1	0	0	0	0	copy fasta	COX8C	chr14	93342182	93353356
COX8C_chr14_93342182_93353356	0/0	c0007	219	1	0	0	1	0	0	copy fasta	COX8C	chr14	93342182	93353356
CPA1_chr7_130375494_130393108	0/1	c0001	1260	247	54	31	133	5	23	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	1/0	c0002	1260	130	18	32	60	4	15	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0003	1260	19	8	7	0	1	3	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0004	1260	10	0	0	10	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0005	1260	10	6	1	1	1	1	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0006	1260	9	1	1	0	4	3	copy fasta	CPA1	chr7	130375494	130393108