JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPA1_chr7_130375494_130393108	0/0	c0007	1260	2	0	0	0	1	1	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0008	1260	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0009	1260	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0010	1260	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0011	1260	1	0	0	1	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0012	1260	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0013	1260	1	0	0	1	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA1_chr7_130375494_130393108	0/0	c0014	1260	1	1	0	0	0	0	copy fasta	CPA1	chr7	130375494	130393108
CPA2_chr7_130261863_130294798	0/1	c0001	1260	259	47	46	126	9	30	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	1/0	c0002	1260	117	30	22	40	7	17	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0003	1260	6	6	0	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0004	1260	5	5	0	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0005	1260	5	0	0	5	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0006	1260	4	0	0	3	0	1	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0007	1260	1	0	1	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0008	1260	1	0	1	0	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0009	1260	1	0	0	1	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA2_chr7_130261863_130294798	0/0	c0010	1260	1	0	0	1	0	0	copy fasta	CPA2	chr7	130261863	130294798
CPA3_chr3_148860296_148902203	0/1	c0001	1254	332	68	63	151	8	41	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0002	1254	29	25	4	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	1/0	c0003	1254	25	0	5	10	4	5	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0004	1254	4	4	0	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0005	1254	2	0	2	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0006	1254	2	0	0	2	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0009	1254	1	0	0	0	1	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0010	1254	1	0	0	0	1	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0011	1254	1	0	0	0	1	0	copy fasta	CPA3	chr3	148860296	148902203
CPA3_chr3_148860296_148902203	0/0	c0012	1254	1	0	0	0	1	0	copy fasta	CPA3	chr3	148860296	148902203
CPA4_chr7_130288161_130329180	0/1	c0001	1266	203	36	36	97	6	27	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0002	1266	109	14	18	61	5	11	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0003	1266	22	8	7	2	2	3	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0004	1266	13	12	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0005	1266	11	0	9	1	0	1	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0006	1266	5	0	0	5	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0007	1266	5	5	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0008	1266	5	0	1	4	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0009	1266	5	5	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0010	1266	4	4	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0011	1266	4	3	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0012	1266	3	0	0	0	3	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0013	1266	2	2	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0014	1266	2	0	0	2	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0015	1266	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	1/0	c0016	1266	1	0	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0017	1266	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0018	1266	1	0	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0019	1266	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0020	1266	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180