JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPA4_chr7_130288161_130329180	0/0	c0021	1266	1	1	0	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0022	1266	1	0	1	0	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA4_chr7_130288161_130329180	0/0	c0023	1266	1	0	0	1	0	0	copy fasta	CPA4	chr7	130288161	130329180
CPA5_chr7_130339816_130373730	0/0	c0001	1311	158	19	25	90	4	20	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0002	1311	102	6	11	65	5	15	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0003	1311	34	4	6	19	1	4	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0004	1311	20	1	10	8	0	1	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/1	c0005	1311	20	3	6	0	5	5	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	1/0	c0006	1311	13	12	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0007	1311	13	11	2	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0008	1311	10	9	1	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0009	1311	5	1	1	1	1	1	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0010	1311	5	5	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0011	1311	3	0	2	1	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0012	1311	3	0	1	2	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0013	1311	2	0	1	0	0	1	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0014	1311	2	1	1	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0015	1311	2	1	0	0	0	1	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0016	1311	2	1	1	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0017	1311	2	1	1	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0018	1311	2	0	2	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0019	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0020	1311	1	0	0	1	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0021	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0022	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0023	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0024	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0025	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0026	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0027	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0028	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0029	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0030	1311	1	1	0	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0031	1311	1	0	1	0	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA5_chr7_130339816_130373730	0/0	c0032	1311	1	0	0	1	0	0	copy fasta	CPA5	chr7	130339816	130373730
CPA6_chr8_67417038_67751360	1/1	c0001	1314	95	45	16	25	0	7	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0002	1314	34	20	2	8	1	3	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0003	1314	4	1	2	0	1	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0004	1314	3	1	0	0	0	2	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0005	1314	3	0	0	3	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0006	1314	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0007	1314	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0008	1314	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0009	1314	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPA6_chr8_67417038_67751360	0/0	c0010	1314	1	1	0	0	0	0	copy fasta	CPA6	chr8	67417038	67751360
CPAMD8_chr19_16887951_17031810	0/0	c0001	5658	10	0	3	4	1	2	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0002	5658	9	0	1	5	0	3	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0003	5658	7	0	3	3	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0004	5658	6	1	4	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0005	5658	5	0	0	4	0	1	copy fasta	CPAMD8	chr19	16887951	17031810