JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPAMD8_chr19_16887951_17031810	0/0	c0006	5658	5	0	4	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0007	5658	4	0	0	4	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0008	5658	4	0	2	0	2	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0009	5658	4	0	2	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0010	5658	4	0	2	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0011	5658	3	3	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0012	5658	3	0	1	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0013	5658	3	2	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0014	5658	3	0	0	3	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/1	c0015	5658	3	0	1	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0016	5658	3	1	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0017	5658	3	3	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0018	5658	3	3	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0019	5658	2	2	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0020	5658	2	0	1	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0021	5658	2	0	1	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0022	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0023	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0024	5658	2	0	1	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0025	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0026	5658	2	0	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0027	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0028	5658	2	0	1	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0029	5658	2	0	0	0	0	2	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0030	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0031	5658	2	0	2	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0032	5658	2	0	0	0	0	2	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0033	5658	2	0	1	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0034	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0035	5658	2	0	1	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0036	5658	2	0	1	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0037	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	1/0	c0038	5658	2	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0039	5658	2	0	1	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0040	5658	2	0	1	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0041	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0042	5658	2	0	0	1	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0043	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0044	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0045	5658	2	0	0	2	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0046	5658	2	2	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0047	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0048	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0049	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0050	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0051	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0052	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0053	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0054	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0055	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810