JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPAMD8_chr19_16887951_17031810	0/0	c0056	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0057	5658	1	0	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0058	5658	1	0	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0059	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0060	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0061	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0062	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0063	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0064	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0065	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0066	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0067	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0068	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0069	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0070	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0071	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0072	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0073	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0074	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0075	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0076	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0077	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0078	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0079	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0080	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0081	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0082	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0083	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0084	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0085	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0086	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0087	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0088	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0089	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0090	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0091	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0092	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0093	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0094	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0095	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0096	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0097	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0098	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0099	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0100	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0101	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0102	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0103	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0104	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0105	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810