JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPAMD8_chr19_16887951_17031810	0/0	c0156	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0157	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0158	5658	1	0	0	1	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0159	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0160	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0161	5658	1	0	0	0	0	1	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0162	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0163	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0164	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0165	5658	1	0	0	0	1	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0166	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0167	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0168	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0169	5658	1	0	1	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0170	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0171	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0172	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0173	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0174	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0175	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0176	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0177	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0178	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0179	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0180	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0181	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0182	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0183	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0184	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0185	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPAMD8_chr19_16887951_17031810	0/0	c0186	5658	1	1	0	0	0	0	copy fasta	CPAMD8	chr19	16887951	17031810
CPB1_chr3_148822811_148865187	1/1	c0001	1254	316	56	62	144	16	36	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0002	1254	114	35	11	54	1	13	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0003	1254	17	2	7	7	0	1	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0004	1254	2	2	0	0	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0005	1254	1	1	0	0	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0006	1254	1	0	0	1	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0007	1254	1	1	0	0	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0008	1254	1	0	0	1	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0009	1254	1	0	0	1	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0010	1254	1	0	0	0	1	0	copy fasta	CPB1	chr3	148822811	148865187
CPB1_chr3_148822811_148865187	0/0	c0011	1254	1	1	0	0	0	0	copy fasta	CPB1	chr3	148822811	148865187
CPB2_chr13_46048186_46110033	0/0	c0001	1272	105	29	25	38	3	10	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	c0002	1272	100	28	20	45	2	5	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	1/0	c0003	1272	59	8	15	23	3	9	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	c0004	1272	50	10	4	32	0	4	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/1	c0005	1272	7	0	1	2	1	2	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	c0006	1272	3	0	3	0	0	0	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	c0007	1272	3	3	0	0	0	0	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	c0008	1272	1	0	0	1	0	0	copy fasta	CPB2	chr13	46048186	46110033