JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPB2_chr13_46048186_46110033	0/0	c0009	1272	1	0	0	1	0	0	copy fasta	CPB2	chr13	46048186	46110033
CPB2_chr13_46048186_46110033	0/0	c0010	1272	1	0	0	0	1	0	copy fasta	CPB2	chr13	46048186	46110033
CPD_chr17_30373927_30474989	1/1	c0001	4143	262	73	57	83	12	35	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0002	4143	7	6	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0003	4143	5	0	0	5	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0004	4143	5	0	0	4	0	1	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0005	4143	3	0	3	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0006	4143	2	2	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0007	4143	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0008	4143	1	0	1	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0009	4143	1	0	0	0	0	1	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0010	4143	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0011	4143	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0012	4143	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0013	4143	1	1	0	0	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0014	4143	1	0	0	0	0	1	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0015	4143	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0016	4143	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0017	4143	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPD_chr17_30373927_30474989	0/0	c0018	4143	1	0	0	1	0	0	copy fasta	CPD	chr17	30373927	30474989
CPEB1_chr15_82538201_82652363	1/1	c0001	1767	176	48	41	65	9	11	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	c0002	1767	167	35	18	84	8	22	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	c0003	1767	4	4	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	c0004	1767	3	0	1	0	1	1	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	c0005	1767	2	2	0	0	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB1_chr15_82538201_82652363	0/0	c0006	1767	2	1	0	1	0	0	copy fasta	CPEB1	chr15	82538201	82652363
CPEB2_chr4_14997481_15075151	0/0	c0001	3105	110	19	24	51	6	10	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0002	3114	38	23	3	11	0	1	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	1/1	c0003	3105	33	6	7	4	3	11	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0004	3105	14	0	3	7	0	4	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0005	3108	13	4	1	5	1	2	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0006	3114	9	0	0	7	0	2	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0007	3105	7	7	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0008	3105	7	0	5	0	2	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0009	3105	7	0	3	0	0	4	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0010	3105	6	6	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0011	3117	5	0	0	5	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0012	3105	5	5	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0013	3105	5	5	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0014	3090	5	0	1	4	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0015	3114	3	0	0	3	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0016	3105	3	3	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0017	3114	2	0	0	2	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0018	3108	2	2	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0019	3108	2	1	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0020	3114	1	0	0	0	0	1	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0021	3114	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0022	3114	1	0	0	0	0	1	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0023	3108	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0024	3105	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151