JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPEB2_chr4_14997481_15075151	0/0	c0025	3105	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0026	3105	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0027	3105	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0028	3105	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0029	3105	1	0	0	1	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0030	3105	1	0	1	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB2_chr4_14997481_15075151	0/0	c0031	3105	1	1	0	0	0	0	copy fasta	CPEB2	chr4	14997481	15075151
CPEB3_chr10_92041692_92296078	0/1	c0001	2097	100	46	20	12	4	17	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0002	2097	93	24	17	39	2	11	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	1/0	c0003	2097	77	2	14	44	4	12	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0004	2097	3	3	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0005	2097	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0006	2097	1	0	1	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0007	2097	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0008	2097	1	0	0	1	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB3_chr10_92041692_92296078	0/0	c0009	2097	1	1	0	0	0	0	copy fasta	CPEB3	chr10	92041692	92296078
CPEB4_chr5_173883349_173966980	1/1	c0001	2190	364	86	69	159	9	39	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0002	2190	2	0	2	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0003	2190	1	0	0	0	0	1	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0004	2190	1	0	0	0	1	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0005	2190	1	0	1	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0006	2190	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0007	2190	1	1	0	0	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPEB4_chr5_173883349_173966980	0/0	c0008	2190	1	0	0	1	0	0	copy fasta	CPEB4	chr5	173883349	173966980
CPED1_chr7_120983711_121302442	0/0	c0001	3081	50	29	12	4	2	3	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/1	c0002	3081	38	5	15	13	1	3	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	1/0	c0003	3081	26	17	6	1	1	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0004	3081	6	6	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0005	3081	3	3	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0006	3081	3	3	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0007	3081	2	2	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0008	3081	2	2	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0009	3081	2	2	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0010	3081	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0011	3081	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0012	3081	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0013	3081	1	0	1	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0014	3081	1	0	0	1	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0015	3081	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0016	3081	1	1	0	0	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPED1_chr7_120983711_121302442	0/0	c0017	3081	1	0	0	1	0	0	copy fasta	CPED1	chr7	120983711	121302442
CPE_chr4_165374008_165503547	1/1	c0001	1431	304	84	50	125	6	37	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	c0002	1431	14	1	1	11	0	1	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	c0003	1431	5	0	0	5	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	c0004	1431	4	3	1	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	c0005	1431	3	3	0	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	c0006	1431	1	0	0	1	0	0	copy fasta	CPE	chr4	165374008	165503547
CPE_chr4_165374008_165503547	0/0	c0007	1431	1	1	0	0	0	0	copy fasta	CPE	chr4	165374008	165503547
CPHXL2_chr16_75655227_75682009	1/1	c0001	1203	371	80	70	166	15	38	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0002	1203	7	0	0	6	0	1	copy fasta	CPHXL2	chr16	75655227	75682009