JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPHXL2_chr16_75655227_75682009	0/0	c0003	1203	5	5	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0004	1203	2	1	1	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0005	1203	1	0	0	0	0	1	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0006	1203	1	0	0	0	1	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0007	1203	1	0	0	1	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0008	1203	1	1	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0009	1203	1	0	1	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0010	1203	1	1	0	0	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL2_chr16_75655227_75682009	0/0	c0011	1203	1	0	0	1	0	0	copy fasta	CPHXL2	chr16	75655227	75682009
CPHXL_chr16_75709131_75731490	0/1	c0001	1218	310	70	48	158	10	23	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	1/0	c0002	1218	60	3	22	5	8	21	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0003	1218	6	6	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0004	1218	2	0	2	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0005	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0006	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0007	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0008	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0009	1218	1	0	1	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0010	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0011	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0012	1218	1	0	1	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0013	1218	1	1	0	0	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPHXL_chr16_75709131_75731490	0/0	c0014	1218	1	0	0	1	0	0	copy fasta	CPHXL	chr16	75709131	75731490
CPLANE1_chr5_37101235_37254376	1/1	c0001	9756	131	11	32	70	7	9	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0002	9756	18	4	8	2	2	2	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0003	9756	13	11	1	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0004	9756	13	10	3	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0005	9756	8	7	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0006	9756	7	7	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0007	9756	7	7	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0008	9756	7	0	0	7	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0009	9756	7	0	0	7	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0010	9756	6	0	2	4	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0011	9756	5	5	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0012	9756	5	5	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0013	9756	3	3	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0014	9756	3	0	0	3	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0015	9756	2	0	1	0	1	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0016	9756	2	0	0	2	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0017	9756	2	0	0	2	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0018	9756	2	0	0	0	0	2	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0019	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0020	9756	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0021	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0022	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0023	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0024	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0025	9756	1	0	0	0	1	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0026	9756	1	0	0	0	0	1	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0027	9756	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376