JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPLANE1_chr5_37101235_37254376	0/0	c0028	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0029	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0030	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0031	9756	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0032	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0033	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0034	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0035	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0036	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0037	9756	1	0	0	0	0	1	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0038	9756	1	0	0	0	0	1	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0039	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0040	9756	1	0	0	0	1	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0041	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0042	9756	1	0	0	1	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0043	9756	1	0	1	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0044	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE1_chr5_37101235_37254376	0/0	c0045	9756	1	1	0	0	0	0	copy fasta	CPLANE1	chr5	37101235	37254376
CPLANE2_chr1_16226692_16242183	1/1	c0001	777	362	76	77	148	16	43	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	c0002	777	9	9	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	c0003	777	6	5	1	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	c0004	777	1	0	0	0	0	1	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	c0005	777	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLANE2_chr1_16226692_16242183	0/0	c0006	777	1	1	0	0	0	0	copy fasta	CPLANE2	chr1	16226692	16242183
CPLX1_chr4_779957_831129	1/1	c0001	405	414	84	84	178	18	48	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	c0002	405	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX1_chr4_779957_831129	0/0	c0003	405	1	1	0	0	0	0	copy fasta	CPLX1	chr4	779957	831129
CPLX2_chr5_175866578_175889021	1/1	c0001	405	374	90	71	157	16	38	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	c0002	405	3	0	0	3	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX2_chr5_175866578_175889021	0/0	c0003	422	1	0	1	0	0	0	copy fasta	CPLX2	chr5	175866578	175889021
CPLX3_chr15_74821627_74836802	1/1	c0001	477	437	89	66	218	18	44	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	c0002	477	3	1	2	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	c0003	477	1	0	1	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX3_chr15_74821627_74836802	0/0	c0004	477	1	0	1	0	0	0	copy fasta	CPLX3	chr15	74821627	74836802
CPLX4_chr18_59290402_59323649	1/1	c0001	483	412	85	67	198	16	44	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	c0002	483	4	3	1	0	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	c0003	483	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPLX4_chr18_59290402_59323649	0/0	c0004	483	1	0	0	1	0	0	copy fasta	CPLX4	chr18	59290402	59323649
CPM_chr12_68846175_68938171	0/1	c0001	1332	116	16	17	65	7	10	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	1/0	c0002	1332	114	8	16	73	3	13	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0003	1332	26	24	1	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0004	1332	20	6	10	1	0	3	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0005	1332	17	17	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0006	1332	15	7	5	0	0	3	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0007	1332	12	0	4	0	2	6	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0008	1332	6	5	0	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0009	1332	4	3	0	1	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0010	1332	3	2	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0011	1332	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0012	1332	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171