JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPM_chr12_68846175_68938171	0/0	c0013	1332	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0014	1332	1	0	0	0	0	1	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0015	1332	1	1	0	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0016	1332	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPM_chr12_68846175_68938171	0/0	c0017	1332	1	0	1	0	0	0	copy fasta	CPM	chr12	68846175	68938171
CPN1_chr10_100037193_100086869	1/0	c0001	1377	246	70	64	72	10	29	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0002	1377	42	3	0	36	0	3	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/1	c0003	1377	16	1	0	11	0	3	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0004	1377	8	0	4	4	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0005	1377	7	7	0	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0006	1377	7	0	2	5	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0007	1377	6	5	1	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0008	1377	5	5	0	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0009	1377	2	2	0	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0010	1377	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0011	1377	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0012	1377	1	0	0	0	0	1	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0013	1377	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0014	1377	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0015	1377	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0016	1377	1	1	0	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0017	1377	1	0	0	1	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN1_chr10_100037193_100086869	0/0	c0018	1377	1	0	1	0	0	0	copy fasta	CPN1	chr10	100037193	100086869
CPN2_chr3_194334768_194356328	0/0	c0001	1638	114	16	19	57	6	16	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/1	c0002	1638	110	5	18	73	2	11	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	1/0	c0003	1638	72	5	13	35	3	15	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0004	1638	68	25	14	22	3	4	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0005	1638	19	10	7	2	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0006	1638	17	15	1	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0007	1638	10	10	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0008	1638	4	4	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0009	1638	2	0	0	0	1	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0010	1638	2	0	2	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0011	1638	2	0	2	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0012	1638	2	2	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0013	1638	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0014	1638	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0015	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0016	1638	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0017	1638	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0018	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0019	1638	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0020	1638	1	0	0	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0021	1638	1	0	0	1	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0022	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0023	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0024	1638	1	0	1	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0025	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0026	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0027	1638	1	0	0	0	1	0	copy fasta	CPN2	chr3	194334768	194356328