JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPN2_chr3_194334768_194356328	0/0	c0028	1638	1	0	0	0	0	1	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0029	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPN2_chr3_194334768_194356328	0/0	c0030	1638	1	1	0	0	0	0	copy fasta	CPN2	chr3	194334768	194356328
CPNE1_chr20_35621044_35669900	1/1	c0001	1614	158	39	29	66	5	17	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0002	1615	45	8	12	20	2	3	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0003	1614	30	23	5	0	1	1	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0004	1614	15	0	1	0	2	12	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0005	1614	9	3	0	6	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0006	1614	6	6	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0007	1614	2	2	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0008	1614	2	0	2	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0009	1614	1	1	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0010	1614	1	0	1	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0011	1615	1	0	0	0	0	1	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0012	1614	1	1	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE1_chr20_35621044_35669900	0/0	c0013	1614	1	1	0	0	0	0	copy fasta	CPNE1	chr20	35621044	35669900
CPNE2_chr16_57087583_57153369	1/0	c0001	1647	308	83	57	120	14	33	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	c0002	1647	38	0	1	28	0	9	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/1	c0003	1647	4	3	0	0	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	c0004	1647	3	3	0	0	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	c0005	1647	3	3	0	0	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	c0006	1647	3	0	0	3	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	c0007	1647	2	2	0	0	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE2_chr16_57087583_57153369	0/0	c0008	1647	1	0	0	1	0	0	copy fasta	CPNE2	chr16	57087583	57153369
CPNE3_chr8_86509435_86566498	1/1	c0001	1614	214	22	42	122	5	21	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0002	1614	42	17	4	15	1	5	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0003	1614	26	9	5	3	2	7	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0004	1614	21	19	2	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0005	1614	12	7	4	0	0	1	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0006	1614	9	8	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0007	1614	3	3	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0008	1614	2	2	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0009	1614	2	2	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0010	1614	2	0	0	2	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0011	1614	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0012	1614	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0013	1614	1	1	0	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0014	1614	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0015	1571	1	0	0	1	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0016	1614	1	0	0	1	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE3_chr8_86509435_86566498	0/0	c0017	1614	1	0	1	0	0	0	copy fasta	CPNE3	chr8	86509435	86566498
CPNE4_chr3_131528569_132040014	1/1	c0001	1674	53	23	7	13	0	8	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	c0002	1674	19	7	3	5	0	4	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	c0003	1674	12	10	0	2	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	c0004	1674	5	5	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	c0005	1674	4	2	2	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE4_chr3_131528569_132040014	0/0	c0006	1674	1	1	0	0	0	0	copy fasta	CPNE4	chr3	131528569	132040014
CPNE5_chr6_36735775_36844444	0/1	c0001	1782	203	30	32	105	10	25	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0002	1782	97	44	16	31	2	4	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	1/0	c0003	1782	60	10	12	20	6	11	copy fasta	CPNE5	chr6	36735775	36844444