JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPNE5_chr6_36735775_36844444	0/0	c0004	1782	4	3	1	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0005	1782	3	0	0	3	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0006	1782	3	2	1	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0007	1782	2	2	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0008	1782	2	2	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0009	1782	2	0	0	2	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0010	1782	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0011	1782	1	1	0	0	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0012	1782	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE5_chr6_36735775_36844444	0/0	c0013	1782	1	0	0	1	0	0	copy fasta	CPNE5	chr6	36735775	36844444
CPNE6_chr14_24066562_24083087	0/0	c0001	1674	115	4	32	62	7	10	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0002	1674	107	49	22	17	3	16	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/1	c0003	1674	96	3	6	77	3	6	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0004	1674	54	2	4	43	0	5	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	1/0	c0005	1674	43	30	7	0	2	3	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0006	1674	11	4	1	6	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0007	1674	2	0	0	2	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0008	1674	2	0	0	2	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0009	1674	2	2	0	0	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0010	1674	2	2	0	0	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0011	1674	2	0	2	0	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0012	1674	1	0	0	0	0	1	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0013	1674	1	0	0	0	1	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0014	1674	1	0	0	1	0	0	copy fasta	CPNE6	chr14	24066562	24083087
CPNE6_chr14_24066562_24083087	0/0	c0015	1674	1	0	0	0	0	1	copy fasta	CPNE6	chr14	24066562	24083087
CPNE7_chr16_89570758_89602246	1/0	c0001	1677	123	31	35	18	11	27	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/1	c0002	1677	104	29	8	55	2	9	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0003	1677	26	0	1	24	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0004	1677	18	1	9	6	1	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0005	1677	18	0	11	6	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0006	1677	14	0	0	14	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0007	1677	13	13	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0008	1677	6	5	1	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0009	1677	3	2	0	0	0	1	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0010	1677	2	0	1	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0011	1677	2	0	0	0	2	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0012	1677	2	1	1	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0013	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0014	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0015	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0016	1677	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0017	1677	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0018	1677	1	0	1	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0019	1658	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0020	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0021	1677	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0022	1677	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0023	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0024	1677	1	0	0	1	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0025	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246