JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPNE7_chr16_89570758_89602246	0/0	c0026	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0027	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0028	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE7_chr16_89570758_89602246	0/0	c0029	1677	1	1	0	0	0	0	copy fasta	CPNE7	chr16	89570758	89602246
CPNE8_chr12_38647203_38910591	1/1	c0001	1695	262	84	51	104	6	15	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	c0002	1695	75	4	17	38	8	8	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	c0003	1695	3	0	0	0	0	3	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	c0004	1695	1	1	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE8_chr12_38647203_38910591	0/0	c0005	1695	1	1	0	0	0	0	copy fasta	CPNE8	chr12	38647203	38910591
CPNE9_chr3_9698833_9734908	1/1	c0001	1662	434	94	80	198	18	42	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	c0002	1662	2	2	0	0	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	c0003	1662	1	0	0	1	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	c0004	1662	1	0	0	0	0	1	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	c0005	1662	1	0	0	1	0	0	copy fasta	CPNE9	chr3	9698833	9734908
CPNE9_chr3_9698833_9734908	0/0	c0006	1662	1	0	0	0	0	1	copy fasta	CPNE9	chr3	9698833	9734908
CPOX_chr3_98574446_98598611	0/0	c0001	1365	189	16	41	102	11	19	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/1	c0002	1365	115	46	15	46	2	5	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	1/0	c0003	1365	67	9	10	29	3	15	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0004	1365	38	1	17	15	1	4	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0005	1365	15	12	1	1	0	1	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0006	1365	6	5	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0007	1365	4	4	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0008	1365	3	0	0	3	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0009	1365	2	1	1	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0010	1365	1	0	0	0	1	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0011	1365	1	0	0	0	0	1	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0012	1365	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0013	1365	1	0	0	1	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0014	1365	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0015	1365	1	0	0	0	0	1	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0016	1365	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0017	1365	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPOX_chr3_98574446_98598611	0/0	c0018	1365	1	1	0	0	0	0	copy fasta	CPOX	chr3	98574446	98598611
CPO_chr2_206934518_206974474	1/1	c0001	1125	190	15	43	104	7	19	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0002	1125	86	24	6	44	4	8	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0003	1125	64	14	14	25	5	6	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0004	1125	41	10	4	20	0	7	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0005	1125	11	10	1	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0006	1125	8	8	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0007	1125	5	5	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0008	1125	4	4	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0009	1125	3	2	1	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0010	1125	2	0	2	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0011	1125	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0012	1125	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0013	1125	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0014	1125	1	0	1	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0015	1125	1	0	0	1	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0016	1125	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474
CPO_chr2_206934518_206974474	0/0	c0017	1125	1	1	0	0	0	0	copy fasta	CPO	chr2	206934518	206974474