JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPS1_chr2_210551599_210684107	0/0	c0018	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0019	4503	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0020	4503	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0021	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0022	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0023	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0024	4503	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0025	4503	1	0	0	1	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0026	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0027	4503	1	0	1	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0028	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0029	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0030	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0031	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPS1_chr2_210551599_210684107	0/0	c0032	4503	1	1	0	0	0	0	copy fasta	CPS1	chr2	210551599	210684107
CPSF1_chr8_144388231_144414335	1/1	c0001	4332	177	60	32	58	10	15	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0002	4332	127	18	32	52	6	19	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0003	4332	3	0	0	3	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0004	4332	3	0	0	3	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0005	4332	3	3	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0006	4332	2	0	0	2	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0007	4332	2	0	0	2	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0008	4332	2	2	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0009	4332	2	1	0	0	0	1	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0010	4332	2	0	0	0	0	2	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0011	4332	2	2	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0012	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0013	4332	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0014	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0015	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0016	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0017	4332	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0018	4332	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0019	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0020	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0021	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0022	4332	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0023	4332	1	0	0	0	0	1	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0024	4332	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0025	4332	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0026	4332	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0027	4332	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0028	4332	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0029	4332	1	0	0	1	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0030	4332	1	0	0	0	0	1	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0031	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0032	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0033	4332	1	1	0	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0034	4332	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335
CPSF1_chr8_144388231_144414335	0/0	c0035	4332	1	0	1	0	0	0	copy fasta	CPSF1	chr8	144388231	144414335