JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPT1B_chr22_50563861_50583427	0/0	c0016	2319	1	0	1	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0017	2319	1	0	0	1	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0018	2319	1	0	0	1	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0019	2319	1	0	0	0	0	1	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0020	2319	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0021	2319	1	0	1	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0022	2319	1	0	0	1	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0023	2342	1	0	0	1	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1B_chr22_50563861_50583427	0/0	c0024	2319	1	1	0	0	0	0	copy fasta	CPT1B	chr22	50563861	50583427
CPT1C_chr19_49686116_49718731	1/1	c0001	2412	308	80	50	122	12	42	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0002	2412	13	1	10	0	0	2	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0003	2413	13	2	4	6	0	1	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0004	2412	4	1	0	0	2	1	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0005	2413	3	0	3	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0006	2412	3	0	3	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0007	2413	1	1	0	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0008	2412	1	0	1	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0009	2412	1	0	0	1	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0010	2412	1	0	1	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0011	2412	1	1	0	0	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT1C_chr19_49686116_49718731	0/0	c0012	2412	1	0	0	1	0	0	copy fasta	CPT1C	chr19	49686116	49718731
CPT2_chr1_53191824_53219197	1/0	c0001	1977	200	66	39	58	7	29	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/1	c0002	1977	80	7	12	52	4	4	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0003	1977	40	1	3	36	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0004	1977	34	2	7	22	0	3	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0005	1977	11	8	3	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0006	1977	6	6	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0007	1977	3	0	0	3	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0008	1977	2	2	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0009	1977	2	0	2	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0010	1977	1	0	0	1	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0011	1977	1	0	0	0	1	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0012	1977	1	0	1	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0013	1977	1	0	0	1	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0014	1947	1	1	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0015	1977	1	0	1	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0016	1977	1	1	0	0	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPT2_chr1_53191824_53219197	0/0	c0017	1977	1	0	0	1	0	0	copy fasta	CPT2	chr1	53191824	53219197
CPTP_chr1_1319802_1333896	0/1	c0001	645	271	45	64	110	14	37	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	1/0	c0002	645	97	45	6	36	2	7	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0003	645	3	0	0	3	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0004	645	2	2	0	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0005	645	1	0	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0006	645	1	0	1	0	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0007	645	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0008	645	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPTP_chr1_1319802_1333896	0/0	c0009	645	1	0	0	1	0	0	copy fasta	CPTP	chr1	1319802	1333896
CPVL_chr7_28990235_29151537	1/0	c0001	1431	106	26	16	47	1	15	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/1	c0002	1431	68	16	15	24	3	9	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0003	1431	60	11	7	32	2	8	copy fasta	CPVL	chr7	28990235	29151537