JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPVL_chr7_28990235_29151537	0/0	c0004	1431	12	10	0	0	2	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0005	1431	5	0	2	2	1	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0006	1431	4	2	2	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0007	1431	4	4	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0008	1431	3	0	1	0	0	2	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0009	1431	2	0	1	0	1	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0010	1431	2	2	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0011	1431	2	2	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0012	1431	2	2	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0013	1431	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0014	1431	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0015	1431	1	0	0	1	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0016	1431	1	0	0	1	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0017	1248	1	0	0	1	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0018	1431	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0019	1431	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0020	1431	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0021	1431	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0022	1431	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0023	1431	1	1	0	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPVL_chr7_28990235_29151537	0/0	c0024	1431	1	0	1	0	0	0	copy fasta	CPVL	chr7	28990235	29151537
CPXCR1_chrX_88742225_88759781	0/1	c0001	906	214	46	41	107	5	14	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	c0002	906	39	11	9	6	4	9	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	1/0	c0003	906	30	3	5	15	2	4	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	c0004	906	21	14	1	6	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	c0005	906	1	0	1	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	c0006	906	1	0	0	0	0	1	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	c0007	906	1	1	0	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXCR1_chrX_88742225_88759781	0/0	c0008	906	1	1	0	0	0	0	copy fasta	CPXCR1	chrX	88742225	88759781
CPXM1_chr20_2789074_2805627	1/1	c0001	2205	428	91	78	195	14	48	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0002	2205	6	0	0	6	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0003	2205	4	0	4	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0004	2205	3	3	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0005	2205	2	2	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0006	2205	2	2	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0007	2205	1	0	0	0	0	1	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0008	2205	1	0	1	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0009	2205	1	1	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0010	2205	1	0	0	0	1	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0011	2205	1	0	0	0	1	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0012	2205	1	0	1	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0013	2205	1	0	0	1	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0014	2205	1	0	0	0	0	1	copy fasta	CPXM1	chr20	2789074	2805627
CPXM1_chr20_2789074_2805627	0/0	c0015	2205	1	1	0	0	0	0	copy fasta	CPXM1	chr20	2789074	2805627
CPXM2_chr10_123740639_123896807	0/1	c0001	2271	95	33	13	26	10	12	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0002	2271	48	11	13	14	1	9	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0003	2271	40	1	14	19	0	6	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0004	2271	39	3	7	26	1	2	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0005	2271	14	13	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0006	2271	6	6	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807