JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPXM2_chr10_123740639_123896807	0/0	c0007	2271	3	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0008	2271	3	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0009	2271	3	3	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0010	2271	3	0	1	0	0	2	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0011	2271	3	0	0	1	0	2	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0012	2271	2	2	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0013	2271	2	0	1	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0014	2271	2	2	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0015	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0016	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0017	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0018	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0019	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0020	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0021	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0022	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	1/0	c0023	2271	1	0	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0024	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0025	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0026	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0027	2271	1	0	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0028	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0029	2271	1	0	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0030	2271	1	0	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0031	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0032	2271	1	0	0	1	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0033	2271	1	0	0	0	0	1	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0034	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0035	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0036	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0037	2271	1	0	1	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0038	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPXM2_chr10_123740639_123896807	0/0	c0039	2271	1	1	0	0	0	0	copy fasta	CPXM2	chr10	123740639	123896807
CPZ_chr4_8587765_8624752	0/1	c0001	1959	203	14	53	113	4	18	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0002	1959	28	28	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0003	1959	24	2	9	8	5	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0004	1959	22	1	2	14	1	4	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0005	1959	14	0	2	4	3	5	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0006	1959	14	0	0	14	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0007	1959	12	5	1	2	0	4	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0008	1959	8	0	0	8	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0009	1959	8	6	0	0	2	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0010	1959	7	0	0	7	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0011	1959	6	0	2	2	1	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0012	1959	5	4	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0013	1959	5	4	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0014	1959	5	5	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0015	1959	4	4	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0016	1959	3	0	0	3	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0017	1959	3	3	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752