JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPZ_chr4_8587765_8624752	0/0	c0018	1959	3	3	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0019	1959	3	0	3	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0020	1959	3	0	0	3	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0021	1959	3	0	0	0	0	3	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0022	1959	3	0	1	0	0	2	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0023	1959	2	0	1	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0024	1959	2	0	0	2	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0025	1959	2	2	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0026	1959	2	0	0	2	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0027	1959	2	0	0	0	0	2	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0028	1959	2	0	2	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0029	1959	2	2	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0030	1959	2	0	0	2	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0031	1959	2	0	2	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0032	1959	2	0	0	0	0	2	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0033	1959	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0034	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0035	1959	1	0	0	0	1	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0036	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0037	1959	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0038	1959	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0039	1959	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0040	1959	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0041	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0042	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0043	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0044	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0045	1959	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0046	1959	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0047	1959	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0048	1959	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0049	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0050	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0051	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0052	1959	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0053	1959	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0054	1959	1	0	0	1	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0055	1959	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0056	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0057	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0058	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0059	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0060	1959	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0061	1959	1	0	0	0	0	1	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0062	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0063	1959	1	0	1	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0064	1959	1	0	0	0	1	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0065	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	1/0	c0066	1959	1	0	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CPZ_chr4_8587765_8624752	0/0	c0067	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752