JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CPZ_chr4_8587765_8624752	0/0	c0068	1959	1	1	0	0	0	0	copy fasta	CPZ	chr4	8587765	8624752
CP_chr3_149167497_149226829	0/1	c0001	3198	276	40	40	144	13	38	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	1/0	c0002	3198	41	28	2	0	5	5	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0003	3198	8	0	8	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0004	3198	8	6	2	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0005	3198	6	0	5	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0006	3198	4	4	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0007	3198	3	3	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0008	3198	3	2	1	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0009	3198	3	0	2	0	0	1	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0010	3198	2	2	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0011	3198	2	0	2	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0012	3198	2	2	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0013	3198	2	0	0	0	0	2	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0014	3198	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0015	3198	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0016	3198	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0017	3198	1	0	0	0	0	1	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0018	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0019	3198	1	0	0	0	0	1	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0020	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0021	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0022	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0023	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0024	3198	1	0	1	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0025	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0026	3198	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0027	3198	1	0	0	1	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0028	3198	1	1	0	0	0	0	copy fasta	CP	chr3	149167497	149226829
CP_chr3_149167497_149226829	0/0	c0029	3198	1	0	1	0	0	0	copy fasta	CP	chr3	149167497	149226829
CR1L_chr1_207640133_207728703	0/0	c0001	1710	69	17	7	31	3	11	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0002	1710	64	19	11	29	1	4	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0003	1710	51	1	26	11	7	6	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0004	1710	49	1	6	37	1	4	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/1	c0005	1710	22	4	7	5	3	2	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0006	1710	17	2	6	8	1	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	1/0	c0007	1710	14	13	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0008	1710	5	0	1	4	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0009	1710	4	2	2	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0010	1710	4	3	1	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0011	1710	3	0	0	3	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0012	1710	3	3	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0013	1710	3	0	0	3	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0014	1710	3	0	0	1	0	2	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0015	1710	3	0	2	0	0	1	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0016	1710	2	1	1	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0017	1710	2	2	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0018	1710	2	0	2	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0019	1710	2	0	0	2	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0020	1710	2	0	0	2	0	0	copy fasta	CR1L	chr1	207640133	207728703