JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CR1L_chr1_207640133_207728703	0/0	c0021	1710	2	2	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0022	1710	2	2	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0023	1710	2	0	1	0	0	1	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0024	1710	2	0	0	0	0	2	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0025	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0026	1710	1	0	0	1	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0027	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0028	1710	1	0	1	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0029	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0030	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0031	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0032	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0033	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0034	1710	1	0	0	1	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0035	1710	1	0	0	1	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0036	1710	1	0	0	1	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0037	1710	1	0	0	0	0	1	copy fasta	CR1L	chr1	207640133	207728703
CR1L_chr1_207640133_207728703	0/0	c0038	1710	1	1	0	0	0	0	copy fasta	CR1L	chr1	207640133	207728703
CR1_chr1_207491157_207646765	0/0	c0001	6120	73	10	12	37	3	11	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0002	6120	48	4	13	21	4	6	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0003	6120	32	0	1	29	0	2	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0004	6120	28	0	0	22	0	6	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/1	c0005	6120	22	2	7	5	3	4	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0006	6120	14	14	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0007	6120	10	0	8	0	1	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0008	7470	9	2	2	3	1	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0009	6120	8	8	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0010	6120	7	7	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0011	6120	7	4	2	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0012	6120	5	5	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0013	6120	5	1	3	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0014	6120	4	0	0	4	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0015	6120	4	0	2	0	0	2	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0016	7470	3	0	1	2	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0017	6120	3	0	0	3	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0018	6120	3	0	0	3	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0019	7470	3	0	3	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0020	6120	3	2	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0021	6120	3	3	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0022	7470	2	0	2	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	1/0	c0023	7470	2	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0024	7470	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0025	6120	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0026	7470	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0027	6120	2	2	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0028	4770	2	1	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0029	7470	2	0	1	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0030	6120	2	0	1	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0031	6120	2	0	0	2	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0032	7470	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765