JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CR1_chr1_207491157_207646765	0/0	c0033	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0034	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0035	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0036	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0037	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0038	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0039	4770	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0040	6120	1	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0041	6120	1	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0042	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0043	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0044	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0045	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0046	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0047	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0048	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0049	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0050	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0051	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0052	4770	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0053	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0054	7470	1	0	1	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0055	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0056	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0057	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0058	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0059	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0060	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0061	4770	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0062	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0063	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0064	7470	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0065	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0066	6120	1	0	0	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0067	4770	1	0	0	0	0	1	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0068	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0069	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0070	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0071	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0072	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0073	6120	1	0	0	1	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0074	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0075	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0076	7470	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR1_chr1_207491157_207646765	0/0	c0077	6120	1	1	0	0	0	0	copy fasta	CR1	chr1	207491157	207646765
CR2_chr1_207449328_207494892	0/1	c0001	3279	190	20	31	115	6	17	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0002	3279	58	16	9	28	0	5	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0003	3279	41	6	3	29	0	3	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0004	3279	15	9	3	0	2	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0005	3279	11	11	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892