JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CR2_chr1_207449328_207494892	0/0	c0006	3279	10	10	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0007	3279	7	6	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	1/0	c0008	3279	6	0	3	0	1	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0009	3279	5	3	2	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0010	3279	5	0	0	5	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0011	3279	3	0	0	3	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0012	3279	3	3	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0013	3279	2	0	2	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0014	3279	2	0	0	2	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0015	3279	2	0	0	0	0	2	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0016	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0017	3279	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0018	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0019	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0020	3279	1	0	0	0	0	1	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0021	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0022	3279	1	0	0	0	1	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0023	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0024	3279	1	0	0	1	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0025	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0026	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0027	3279	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0028	3279	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0029	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0030	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0031	3279	1	0	1	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0032	3279	1	0	0	1	0	0	copy fasta	CR2	chr1	207449328	207494892
CR2_chr1_207449328_207494892	0/0	c0033	3279	1	1	0	0	0	0	copy fasta	CR2	chr1	207449328	207494892
CRABP1_chr15_78335353_78353225	1/0	c0001	414	248	68	28	123	9	19	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/1	c0002	414	201	27	45	92	7	29	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/0	c0003	414	7	0	3	0	2	2	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/0	c0004	414	3	0	0	3	0	0	copy fasta	CRABP1	chr15	78335353	78353225
CRABP1_chr15_78335353_78353225	0/0	c0005	414	1	1	0	0	0	0	copy fasta	CRABP1	chr15	78335353	78353225
CRABP2_chr1_156694606_156710583	1/1	c0001	417	435	97	78	196	16	46	copy fasta	CRABP2	chr1	156694606	156710583
CRABP2_chr1_156694606_156710583	0/0	c0002	417	1	1	0	0	0	0	copy fasta	CRABP2	chr1	156694606	156710583
CRACDL_chr2_98788846_98941225	1/1	c0001	2889	260	55	58	109	7	29	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0002	2889	22	2	0	18	0	2	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0003	2889	11	0	6	2	1	2	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0004	2889	7	7	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0005	2889	4	4	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0006	2889	2	1	1	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0007	2889	2	2	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0008	2889	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0009	2889	1	0	0	0	0	1	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0010	2889	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0011	2889	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0012	2889	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0013	2889	1	0	1	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0014	2889	1	1	0	0	0	0	copy fasta	CRACDL	chr2	98788846	98941225
CRACDL_chr2_98788846_98941225	0/0	c0015	2889	1	0	0	1	0	0	copy fasta	CRACDL	chr2	98788846	98941225