JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRACD_chr4_56044098_56335609	0/0	c0001	3702	71	14	19	30	3	5	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/1	c0002	3720	42	5	19	3	2	12	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0003	3702	34	0	9	18	2	5	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0004	3702	22	0	1	17	0	4	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0005	3720	9	8	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0006	3702	8	8	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0007	3720	5	4	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0008	3702	5	0	3	0	1	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0009	3702	4	4	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	1/0	c0010	3702	3	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0011	3720	3	3	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0012	3711	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0013	3702	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0014	3702	2	0	1	0	1	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0015	3711	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0016	3702	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0017	3711	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0018	3702	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0019	3702	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0020	3720	2	2	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0021	3720	1	0	0	0	1	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0022	3702	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0023	3702	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0024	3702	1	0	0	0	0	1	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0025	3729	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0026	3720	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0027	3702	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0028	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0029	3702	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0030	3702	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0031	3702	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0032	3711	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0033	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0034	3702	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0035	3702	1	0	0	1	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0036	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0037	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0038	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0039	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0040	3702	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0041	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0042	3711	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0043	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0044	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0045	3702	1	0	1	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACD_chr4_56044098_56335609	0/0	c0046	3702	1	1	0	0	0	0	copy fasta	CRACD	chr4	56044098	56335609
CRACR2A_chr12_3610328_3758109	1/0	c0001	2196	194	50	35	83	6	19	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0002	2196	35	2	8	20	0	5	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/1	c0003	2196	16	4	8	1	0	2	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0004	2196	11	4	2	3	0	2	copy fasta	CRACR2A	chr12	3610328	3758109