JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRACR2A_chr12_3610328_3758109	0/0	c0005	2196	9	1	2	6	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0006	2196	8	2	1	1	2	2	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0007	2196	4	4	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0008	2196	4	1	1	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0009	2196	3	0	1	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0010	2196	3	1	0	1	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0011	2196	3	2	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0012	2196	3	0	1	1	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0013	2196	2	2	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0014	2196	2	2	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0015	2196	2	0	0	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0016	2196	2	2	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0017	2196	2	0	0	2	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0018	2196	2	0	0	0	0	2	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0019	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0020	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0021	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0022	2196	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0023	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0024	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0025	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0026	2196	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0027	2196	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0028	2196	1	0	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0029	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0030	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0031	2196	1	0	0	0	0	1	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0032	2196	1	0	1	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2A_chr12_3610328_3758109	0/0	c0033	2196	1	1	0	0	0	0	copy fasta	CRACR2A	chr12	3610328	3758109
CRACR2B_chr11_822919_836986	0/0	c0001	1200	271	40	65	143	11	12	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	1/1	c0002	1200	93	26	16	18	5	26	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0003	1200	59	17	3	33	0	6	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0004	1200	3	3	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0005	1200	3	0	0	0	1	2	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0006	1200	3	0	0	3	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0007	1200	2	0	1	0	0	1	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0008	1200	2	2	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0009	1200	1	0	0	0	0	1	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0010	1200	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0011	1200	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0012	1200	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0013	1200	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0014	1200	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0015	1200	1	0	0	0	1	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0016	1200	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0017	1200	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0018	1200	1	0	1	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0019	1200	1	1	0	0	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRACR2B_chr11_822919_836986	0/0	c0020	1200	1	0	0	1	0	0	copy fasta	CRACR2B	chr11	822919	836986
CRADD_chr12_93672375_93855756	1/1	c0001	600	193	74	36	55	1	25	copy fasta	CRADD	chr12	93672375	93855756