Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS18_chr16_77277128_77440034	0/0	c0019	3666	3	0	0	2	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0020	3666	3	0	1	0	2	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0021	3666	3	0	0	3	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0022	3666	3	0	2	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0023	3666	2	0	2	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0024	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0025	3666	2	0	2	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0026	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0027	3666	2	1	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0028	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0029	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0030	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0031	3666	2	0	0	1	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0032	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0033	3666	2	2	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0034	3666	2	0	2	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0035	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0036	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0037	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0038	3666	1	0	0	0	1	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0039	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0040	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0041	3666	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0042	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0043	3666	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0044	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0045	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0046	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0047	3666	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0048	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0049	3666	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0050	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0051	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0052	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0053	3666	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0054	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0055	3666	1	1	0	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0056	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0057	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0058	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0059	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0060	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0061	3666	1	0	0	1	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0062	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0063	3666	1	0	1	0	0	0	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS18_chr16_77277128_77440034	0/0	c0064	3666	1	0	0	0	0	1	copy fasta	ADAMTS18	chr16	77277128	77440034
ADAMTS19_chr5_129455298_129743683	0/1	c0001	3642	121	49	19	40	0	12	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0002	3648	46	4	5	32	0	5	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0003	3642	15	2	6	3	0	4	copy fasta	ADAMTS19	chr5	129455298	129743683
ADAMTS19_chr5_129455298_129743683	0/0	c0004	3648	9	8	1	0	0	0	copy fasta	ADAMTS19	chr5	129455298	129743683