JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRADD_chr12_93672375_93855756	0/0	c0002	600	49	1	13	30	1	4	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	c0003	600	3	3	0	0	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	c0004	600	1	0	0	0	0	1	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	c0005	600	1	0	0	1	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRADD_chr12_93672375_93855756	0/0	c0006	600	1	0	1	0	0	0	copy fasta	CRADD	chr12	93672375	93855756
CRAMP1_chr16_1607360_1682908	0/0	c0001	3810	159	39	17	86	4	13	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0002	3810	67	15	16	30	0	6	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	1/1	c0003	3810	51	6	10	29	0	4	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0004	3810	11	0	7	0	2	2	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0005	3810	9	9	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0006	3810	8	7	1	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0007	3810	5	0	0	5	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0008	3810	3	3	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0009	3810	2	2	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0010	3810	2	0	0	2	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0011	3810	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0012	3810	1	0	1	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0013	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0014	3810	1	0	0	0	0	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0015	3810	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0016	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0017	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0018	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0019	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0020	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0021	3810	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0022	3810	1	1	0	0	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0023	3810	1	0	0	0	0	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0024	3810	1	0	0	0	0	1	copy fasta	CRAMP1	chr16	1607360	1682908
CRAMP1_chr16_1607360_1682908	0/0	c0025	3810	1	0	0	1	0	0	copy fasta	CRAMP1	chr16	1607360	1682908
CRAT_chr9_129089794_129115793	0/1	c0001	1881	279	31	52	144	16	35	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0002	1881	73	37	6	28	0	2	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0003	1881	23	0	9	12	0	2	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0004	1881	16	15	1	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0005	1881	14	14	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0006	1881	3	0	0	0	0	3	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0007	1881	2	0	0	2	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	1/0	c0008	1881	2	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0009	1881	1	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0010	1881	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0011	1881	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0012	1896	1	0	0	1	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0013	1881	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0014	1881	1	0	0	0	0	1	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0015	1881	1	1	0	0	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRAT_chr9_129089794_129115793	0/0	c0016	1881	1	0	0	1	0	0	copy fasta	CRAT	chr9	129089794	129115793
CRB1_chr1_197263252_197483455	0/1	c0001	4221	157	48	34	51	4	19	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	1/0	c0002	4221	16	15	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0003	4221	3	0	0	3	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0004	4221	2	2	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455