JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRB1_chr1_197263252_197483455	0/0	c0005	4221	2	2	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0006	4221	1	0	0	1	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0007	4221	1	0	0	1	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0008	4221	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0009	4221	1	0	0	0	0	1	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0010	4221	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB1_chr1_197263252_197483455	0/0	c0011	4221	1	1	0	0	0	0	copy fasta	CRB1	chr1	197263252	197483455
CRB2_chr9_123351197_123383753	0/0	c0001	3858	91	3	18	50	7	13	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0002	3858	61	4	10	39	0	8	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0003	3858	46	6	11	26	1	2	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0004	3858	39	0	6	30	0	3	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0005	3858	30	13	9	3	0	5	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0006	3858	29	11	1	13	1	3	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0007	3858	21	10	1	9	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0008	3858	9	8	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0009	3858	8	1	3	0	2	2	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0010	3858	7	4	0	3	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0011	3858	6	6	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0012	3858	4	4	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0013	3858	4	0	2	0	1	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0014	3858	3	0	3	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0015	3858	3	0	2	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0016	3858	3	3	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0017	3858	3	0	0	3	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0018	3858	2	1	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0019	3858	2	0	1	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0020	3858	2	0	0	0	0	2	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0021	3858	2	0	0	2	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0022	3858	2	1	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0023	3858	2	1	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0024	3858	2	2	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0025	3858	2	2	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0026	3858	2	2	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0027	3858	2	0	1	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0028	3858	2	0	1	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0029	3858	2	0	0	2	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	1/0	c0030	3858	2	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0031	3858	2	2	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0032	3858	2	0	0	1	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0033	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0034	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0035	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0036	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0037	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0038	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0039	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0040	3858	1	0	0	0	0	1	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0041	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0042	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0043	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753