JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRB2_chr9_123351197_123383753	0/0	c0044	3858	1	0	0	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/1	c0045	3858	1	0	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0046	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0047	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0048	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0049	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0050	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0051	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0052	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0053	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0054	3858	1	0	0	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0055	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0056	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0057	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0058	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0059	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0060	3858	1	0	1	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0061	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0062	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0063	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0064	3858	1	0	0	0	1	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0065	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0066	3858	1	1	0	0	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB2_chr9_123351197_123383753	0/0	c0067	3858	1	0	0	1	0	0	copy fasta	CRB2	chr9	123351197	123383753
CRB3_chr19_6459271_6472221	1/0	c0001	363	245	38	42	133	11	20	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/1	c0002	363	143	57	26	25	7	27	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	c0003	363	1	0	0	0	0	1	copy fasta	CRB3	chr19	6459271	6472221
CRB3_chr19_6459271_6472221	0/0	c0004	363	1	1	0	0	0	0	copy fasta	CRB3	chr19	6459271	6472221
CRBN_chr3_3145011_3184691	1/1	c0001	1329	231	84	55	50	10	30	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	c0002	1329	127	0	11	100	2	14	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	c0003	1329	9	1	0	8	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	c0004	1329	8	6	2	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRBN_chr3_3145011_3184691	0/0	c0005	1329	1	1	0	0	0	0	copy fasta	CRBN	chr3	3145011	3184691
CRCP_chr7_66109847_66159568	1/1	c0001	447	361	82	67	160	16	34	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	c0002	447	17	0	1	15	0	1	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	c0003	447	1	0	0	0	0	1	copy fasta	CRCP	chr7	66109847	66159568
CRCP_chr7_66109847_66159568	0/0	c0004	447	1	0	0	1	0	0	copy fasta	CRCP	chr7	66109847	66159568
CRCT1_chr1_152509482_152521008	0/0	c0001	300	219	19	53	114	10	23	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	1/1	c0002	300	123	30	13	58	6	14	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0003	300	36	8	11	12	0	5	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0004	300	26	25	1	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0005	300	10	9	1	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0006	318	10	4	0	6	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0007	300	3	3	0	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0008	300	1	0	1	0	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0009	300	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0010	318	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0011	300	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CRCT1_chr1_152509482_152521008	0/0	c0012	300	1	0	0	1	0	0	copy fasta	CRCT1	chr1	152509482	152521008
CREB1_chr2_207524962_207610988	1/1	c0001	984	308	94	60	96	16	40	copy fasta	CREB1	chr2	207524962	207610988