JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CREB3L1_chr11_46272662_46326409	1/1	c0001	1560	250	71	42	84	16	35	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0002	1560	21	2	4	15	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0003	1560	12	12	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0004	1560	6	0	5	1	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0005	1560	3	3	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0006	1560	3	2	1	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0007	1560	3	0	0	3	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0008	1560	1	0	1	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0009	1560	1	1	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0010	1560	1	0	1	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0011	1560	1	0	0	0	0	1	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0012	1560	1	1	0	0	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L1_chr11_46272662_46326409	0/0	c0013	1560	1	0	0	1	0	0	copy fasta	CREB3L1	chr11	46272662	46326409
CREB3L2_chr7_137869979_138007086	0/0	c0001	1560	156	36	32	68	6	14	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0002	1563	40	11	5	21	0	3	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	1/0	c0003	1563	38	1	18	8	3	7	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/1	c0004	1560	22	20	1	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0005	1560	10	4	3	1	1	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0006	1563	6	5	1	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0007	1560	6	5	0	0	0	1	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0008	1563	5	5	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0009	1560	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0010	1560	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0011	1560	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0012	1563	1	1	0	0	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L2_chr7_137869979_138007086	0/0	c0013	1563	1	0	0	1	0	0	copy fasta	CREB3L2	chr7	137869979	138007086
CREB3L3_chr19_4148631_4178054	1/1	c0001	1386	329	83	74	122	10	38	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0002	1386	37	0	0	32	0	5	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0003	1386	20	9	6	1	2	2	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0004	1386	3	0	0	3	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0005	1386	2	2	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0006	966	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0007	1386	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0008	1386	1	0	1	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0009	1386	1	0	0	0	0	1	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0010	1386	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0011	1386	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0012	1386	1	0	0	0	0	1	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0013	1386	1	0	0	0	0	1	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0014	1386	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0015	1386	1	0	1	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0016	1386	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0017	1386	1	0	0	1	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L3_chr19_4148631_4178054	0/0	c0018	1386	1	1	0	0	0	0	copy fasta	CREB3L3	chr19	4148631	4178054
CREB3L4_chr1_153962902_153979359	1/1	c0001	1188	265	67	38	115	9	34	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0002	1188	107	9	22	63	1	12	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0003	1188	3	2	1	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0004	1188	3	0	1	0	2	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0005	1188	2	0	2	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0006	1188	2	2	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359