JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CREB3L4_chr1_153962902_153979359	0/0	c0007	1188	2	0	0	2	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0008	1188	2	0	2	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0009	1188	2	0	2	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0010	1188	2	2	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0011	1188	1	1	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0012	1188	1	0	0	1	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0013	1188	1	1	0	0	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3L4_chr1_153962902_153979359	0/0	c0014	1188	1	0	0	1	0	0	copy fasta	CREB3L4	chr1	153962902	153979359
CREB3_chr9_35727666_35741999	1/1	c0001	1116	427	92	69	211	14	39	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0002	1116	2	0	0	2	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0003	1116	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0004	1116	1	0	0	1	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0005	1116	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0006	1116	1	0	1	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0007	1116	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0008	1116	1	1	0	0	0	0	copy fasta	CREB3	chr9	35727666	35741999
CREB3_chr9_35727666_35741999	0/0	c0009	1116	1	0	0	0	0	1	copy fasta	CREB3	chr9	35727666	35741999
CREB5_chr7_28407518_28830894	1/1	c0001	1527	196	64	44	42	10	34	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	c0002	1527	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREB5_chr7_28407518_28830894	0/0	c0003	1527	1	1	0	0	0	0	copy fasta	CREB5	chr7	28407518	28830894
CREBBP_chr16_3720054_3885713	1/1	c0001	7329	195	40	33	89	5	26	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0002	7329	20	0	2	14	0	4	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0003	7329	13	0	0	13	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0004	7329	6	6	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0005	7329	6	0	2	4	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0006	7329	4	0	0	4	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0007	7329	4	4	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0008	7329	4	2	2	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0009	7329	3	3	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0010	7329	3	3	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0011	7329	2	2	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0012	7329	2	1	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0013	7329	2	0	0	0	0	2	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0014	7329	2	0	2	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0015	7329	1	0	1	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0016	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0017	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0018	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0019	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0020	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0021	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0022	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0023	7329	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0024	7329	1	0	0	1	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0025	7329	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0026	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0027	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0028	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0029	7329	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0030	7329	1	0	0	0	0	1	copy fasta	CREBBP	chr16	3720054	3885713