JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CREBBP_chr16_3720054_3885713	0/0	c0031	7329	1	0	0	0	1	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0032	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0033	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBBP_chr16_3720054_3885713	0/0	c0034	7329	1	1	0	0	0	0	copy fasta	CREBBP	chr16	3720054	3885713
CREBL2_chr12_12606876_12650108	1/1	c0001	363	371	91	70	154	14	40	copy fasta	CREBL2	chr12	12606876	12650108
CREBL2_chr12_12606876_12650108	0/0	c0002	363	1	1	0	0	0	0	copy fasta	CREBL2	chr12	12606876	12650108
CREBRF_chr5_173051352_173144284	1/1	c0001	1920	247	58	57	89	14	27	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0002	1920	33	20	6	1	0	6	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0003	1920	6	4	2	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0004	1920	2	1	1	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0005	1920	1	1	0	0	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0006	1920	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0007	1920	1	0	0	0	0	1	copy fasta	CREBRF	chr5	173051352	173144284
CREBRF_chr5_173051352_173144284	0/0	c0008	1920	1	0	0	1	0	0	copy fasta	CREBRF	chr5	173051352	173144284
CREBZF_chr11_85652990_85670129	1/1	c0001	1065	239	71	50	80	15	21	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0002	1065	98	16	18	55	0	9	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0003	1065	46	1	4	36	1	4	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0004	1065	2	0	0	0	0	2	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0005	1065	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0006	1065	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0007	1065	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0008	1065	1	0	0	1	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0009	1065	1	1	0	0	0	0	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0010	1065	1	0	0	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREBZF_chr11_85652990_85670129	0/0	c0011	1065	1	0	0	0	0	1	copy fasta	CREBZF	chr11	85652990	85670129
CREG1_chr1_167536013_167558762	1/1	c0001	663	408	93	80	169	18	46	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	c0002	663	3	0	0	3	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	c0003	663	2	0	0	2	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	c0004	663	2	2	0	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	c0005	663	2	0	0	0	0	2	copy fasta	CREG1	chr1	167536013	167558762
CREG1_chr1_167536013_167558762	0/0	c0006	663	1	1	0	0	0	0	copy fasta	CREG1	chr1	167536013	167558762
CREG2_chr2_101340550_101392503	1/0	c0001	873	357	83	65	162	12	34	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/1	c0002	873	24	10	9	0	0	4	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	c0003	873	5	5	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	c0004	873	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CREG2_chr2_101340550_101392503	0/0	c0005	873	1	1	0	0	0	0	copy fasta	CREG2	chr2	101340550	101392503
CRELD1_chr3_9928834_9950406	0/1	c0001	1263	365	83	69	159	11	42	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0002	1263	10	10	0	0	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0003	1264	10	3	2	3	0	2	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0004	1263	6	0	0	6	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	1/0	c0005	1263	3	0	0	0	2	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0006	1263	2	0	1	0	1	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0007	1263	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0008	1263	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0009	1263	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0010	1263	1	0	0	0	0	1	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0011	1263	1	0	0	1	0	0	copy fasta	CRELD1	chr3	9928834	9950406
CRELD1_chr3_9928834_9950406	0/0	c0012	1263	1	0	0	0	0	1	copy fasta	CRELD1	chr3	9928834	9950406
CRELD2_chr22_49913634_49932537	1/1	c0001	1062	178	16	48	80	9	23	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0002	1062	39	25	3	8	0	3	copy fasta	CRELD2	chr22	49913634	49932537