JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRELD2_chr22_49913634_49932537	0/0	c0003	1062	35	14	3	11	2	5	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0004	1062	25	0	6	14	0	5	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0005	1062	8	7	1	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0006	1062	7	6	1	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0007	1062	5	5	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0008	1062	3	0	1	0	2	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0009	1062	2	0	0	2	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0010	1062	2	1	0	0	1	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0011	1062	2	0	0	2	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0012	1062	2	2	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0013	1062	2	2	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0014	1062	1	0	0	0	0	1	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0015	1062	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0016	1062	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0017	1062	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0018	1062	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0019	1062	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0020	1062	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0021	1062	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0022	1062	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0023	1062	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0024	1062	1	1	0	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0025	1062	1	0	1	0	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0026	1062	1	0	0	0	0	1	copy fasta	CRELD2	chr22	49913634	49932537
CRELD2_chr22_49913634_49932537	0/0	c0027	1062	1	0	0	1	0	0	copy fasta	CRELD2	chr22	49913634	49932537
CREM_chr10_35121846_35217953	1/1	c0001	900	277	69	49	102	14	41	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	c0002	900	12	9	3	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	c0003	900	2	1	1	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	c0004	900	1	0	1	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	c0005	900	1	1	0	0	0	0	copy fasta	CREM	chr10	35121846	35217953
CREM_chr10_35121846_35217953	0/0	c0006	900	1	0	0	0	0	1	copy fasta	CREM	chr10	35121846	35217953
CRHBP_chr5_76948045_76974471	1/1	c0001	969	396	79	76	185	14	40	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	c0002	969	10	9	1	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	c0003	969	6	5	1	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	c0004	969	2	0	0	0	0	2	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	c0005	969	1	0	0	1	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHBP_chr5_76948045_76974471	0/0	c0006	969	1	1	0	0	0	0	copy fasta	CRHBP	chr5	76948045	76974471
CRHR1_chr17_45779320_45840828	0/0	c0001	1248	266	84	58	90	10	24	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	c0002	1248	22	3	8	1	4	6	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/1	c0003	1248	6	0	4	1	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	c0004	1248	5	5	0	0	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	c0005	1248	1	0	0	1	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR1_chr17_45779320_45840828	0/0	c0006	1248	1	0	0	1	0	0	copy fasta	CRHR1	chr17	45779320	45840828
CRHR2_chr7_30646942_30687456	1/1	c0001	1236	312	80	64	124	12	30	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0002	1236	63	4	9	40	0	10	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0003	1236	5	4	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0004	1236	3	0	1	0	2	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0005	1236	2	0	1	0	0	1	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0006	1236	2	1	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0007	1236	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456