JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRHR2_chr7_30646942_30687456	0/0	c0008	1236	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0009	1236	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0010	1236	1	0	0	0	0	1	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0011	1236	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0012	1236	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0013	1236	1	0	1	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0014	1236	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0015	1236	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0016	1236	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0017	1236	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0018	1236	1	1	0	0	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRHR2_chr7_30646942_30687456	0/0	c0019	1236	1	0	0	1	0	0	copy fasta	CRHR2	chr7	30646942	30687456
CRH_chr8_66171376_66183464	1/1	c0001	591	202	24	44	92	13	27	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	c0002	591	161	66	21	62	1	11	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	c0003	594	7	0	0	7	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	c0004	591	1	1	0	0	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	c0005	591	1	1	0	0	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	c0006	591	1	0	1	0	0	0	copy fasta	CRH	chr8	66171376	66183464
CRH_chr8_66171376_66183464	0/0	c0007	594	1	0	0	1	0	0	copy fasta	CRH	chr8	66171376	66183464
CRIM1_chr2_36350778_36556135	0/0	c0001	3111	161	39	34	58	5	25	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	1/1	c0002	3111	99	27	24	33	6	7	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0003	3111	19	0	1	16	0	2	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0004	3111	10	10	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0005	3111	5	0	0	5	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0006	3111	5	4	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0007	3111	4	0	0	4	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0008	3111	2	2	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0009	3111	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0010	3111	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0011	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0012	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0013	3111	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0014	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0015	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0016	3111	1	0	0	0	1	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0017	3111	1	0	0	0	0	1	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0018	3111	1	0	1	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0019	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0020	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0021	3111	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0022	3111	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0023	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0024	3111	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0025	3111	1	1	0	0	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0026	3111	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIM1_chr2_36350778_36556135	0/0	c0027	3111	1	0	0	1	0	0	copy fasta	CRIM1	chr2	36350778	36556135
CRIP1_chr14_105481886_105493947	1/1	c0001	234	314	40	58	162	12	40	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	c0002	234	56	46	10	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	c0003	234	12	0	4	0	4	4	copy fasta	CRIP1	chr14	105481886	105493947
CRIP1_chr14_105481886_105493947	0/0	c0004	234	1	1	0	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947