JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRIP1_chr14_105481886_105493947	0/0	c0005	234	1	1	0	0	0	0	copy fasta	CRIP1	chr14	105481886	105493947
CRIP2_chr14_105469821_105485162	1/1	c0001	627	289	59	58	122	10	38	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	c0002	627	21	19	2	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	c0003	627	2	1	1	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	c0004	627	1	1	0	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	c0005	627	1	0	0	0	0	1	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	c0006	627	1	0	1	0	0	0	copy fasta	CRIP2	chr14	105469821	105485162
CRIP2_chr14_105469821_105485162	0/0	c0007	627	1	0	0	0	0	1	copy fasta	CRIP2	chr14	105469821	105485162
CRIP3_chr6_43300472_43313826	1/0	c0001	615	230	86	46	73	5	19	copy fasta	CRIP3	chr6	43300472	43313826
CRIP3_chr6_43300472_43313826	0/1	c0002	615	145	8	26	82	7	21	copy fasta	CRIP3	chr6	43300472	43313826
CRIP3_chr6_43300472_43313826	0/0	c0003	615	1	0	0	1	0	0	copy fasta	CRIP3	chr6	43300472	43313826
CRIPT_chr2_46612215_46635176	1/1	c0001	306	440	90	78	208	16	46	copy fasta	CRIPT	chr2	46612215	46635176
CRISP1_chr6_49829257_49871535	1/1	c0001	750	352	73	67	154	15	41	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	c0002	750	14	12	2	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	c0003	750	6	0	2	0	3	1	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	c0004	750	3	2	1	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	c0005	750	1	0	0	1	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	c0006	750	1	0	0	1	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP1_chr6_49829257_49871535	0/0	c0007	750	1	1	0	0	0	0	copy fasta	CRISP1	chr6	49829257	49871535
CRISP2_chr6_49687359_49718543	1/1	c0001	732	378	72	73	174	16	41	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0002	732	14	13	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0003	732	6	5	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0004	732	3	0	0	0	2	1	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0005	732	3	3	0	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0006	732	2	0	0	0	0	2	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0007	732	2	1	1	0	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0008	732	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP2_chr6_49687359_49718543	0/0	c0009	732	1	0	0	1	0	0	copy fasta	CRISP2	chr6	49687359	49718543
CRISP3_chr6_49722376_49749388	0/0	c0001	777	143	20	42	62	6	13	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	1/1	c0002	777	135	18	24	70	10	11	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0003	777	61	22	3	28	0	8	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0004	777	49	27	4	5	2	11	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0005	777	2	1	1	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0006	777	2	0	0	2	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0007	777	2	2	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0008	777	1	0	0	0	0	1	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0009	777	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0010	777	1	1	0	0	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0011	777	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0012	777	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISP3_chr6_49722376_49749388	0/0	c0013	777	1	0	0	1	0	0	copy fasta	CRISP3	chr6	49722376	49749388
CRISPLD1_chr8_74979505_75039558	1/1	c0001	1503	358	82	64	151	18	41	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	c0002	1503	4	4	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	c0003	1503	3	3	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	c0004	1503	1	0	0	0	0	1	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	c0005	1503	1	1	0	0	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD1_chr8_74979505_75039558	0/0	c0006	1503	1	0	0	1	0	0	copy fasta	CRISPLD1	chr8	74979505	75039558
CRISPLD2_chr16_84814985_84914508	0/0	c0001	1494	65	4	7	48	3	3	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0002	1494	58	18	6	30	1	3	copy fasta	CRISPLD2	chr16	84814985	84914508
CRISPLD2_chr16_84814985_84914508	0/0	c0003	1494	50	4	16	18	0	12	copy fasta	CRISPLD2	chr16	84814985	84914508