JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRLF2_chrX_1185490_1217649	1/0	c0004	1116	15	5	1	6	1	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0005	1116	10	1	2	7	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0006	1116	10	0	5	3	1	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0007	1116	7	0	1	6	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0008	1116	6	0	1	2	2	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0009	1116	5	0	2	2	0	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0010	1116	4	0	2	0	1	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0011	1116	4	2	1	0	1	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0012	1116	3	0	2	0	1	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0013	1116	3	1	2	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0014	1116	2	1	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0015	1116	2	1	0	0	0	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0016	1116	2	0	2	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0017	1115	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0018	1119	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0019	1117	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0020	1115	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0021	1116	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0022	1115	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0023	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0024	1116	1	0	0	0	1	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0025	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0026	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0027	1115	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0028	1116	1	0	0	0	0	1	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0029	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0030	1114	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0031	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0032	1117	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0033	1122	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0034	1117	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0035	1117	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0036	1117	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0037	1115	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0038	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0039	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0040	1116	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/1	c0041	1116	1	0	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0042	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0043	1116	1	0	1	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0044	1116	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0045	1116	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0046	1117	1	0	0	1	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF2_chrX_1185490_1217649	0/0	c0047	1117	1	1	0	0	0	0	copy fasta	CRLF2	chrX	1185490	1217649
CRLF3_chr17_30777684_30829692	1/1	c0001	1329	194	47	48	66	10	21	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	c0002	1329	73	12	13	37	0	11	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	c0003	1329	45	14	9	16	2	4	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	c0004	1329	6	6	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	c0005	1329	3	0	0	3	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	c0006	1329	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692