JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRLF3_chr17_30777684_30829692	0/0	c0007	1329	1	0	0	1	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLF3_chr17_30777684_30829692	0/0	c0008	1329	1	1	0	0	0	0	copy fasta	CRLF3	chr17	30777684	30829692
CRLS1_chr20_6001123_6045053	1/1	c0001	906	332	72	55	156	14	33	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	c0002	906	20	1	11	2	0	6	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	c0003	906	7	7	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	c0004	906	4	4	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	c0005	906	2	2	0	0	0	0	copy fasta	CRLS1	chr20	6001123	6045053
CRLS1_chr20_6001123_6045053	0/0	c0006	906	1	0	0	0	0	1	copy fasta	CRLS1	chr20	6001123	6045053
CRMP1_chr4_5815764_5898086	1/1	c0001	2061	87	5	25	39	7	9	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0002	2061	61	16	15	19	4	7	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0003	2061	60	13	5	34	1	7	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0004	2061	13	11	2	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0005	2061	10	8	1	0	1	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0006	2061	8	1	3	0	3	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0007	2061	7	6	1	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0008	2061	6	6	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0009	2061	6	0	0	4	0	2	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0010	2061	6	0	2	2	0	2	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0011	2061	5	5	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0012	2061	5	5	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0013	2061	5	0	2	2	1	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0014	2061	5	5	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0015	2061	5	1	0	2	1	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0016	2061	2	2	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0017	2061	2	2	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0018	2061	2	2	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0019	2061	2	1	1	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0020	2061	2	0	2	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0021	2061	2	0	2	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0022	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0023	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0024	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0025	2061	1	0	1	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0026	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0027	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0028	2061	1	0	0	0	0	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0029	2061	1	0	0	1	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0030	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0031	2061	1	0	0	0	0	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0032	2061	1	0	0	0	0	1	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0033	2061	1	0	0	1	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRMP1_chr4_5815764_5898086	0/0	c0034	2061	1	1	0	0	0	0	copy fasta	CRMP1	chr4	5815764	5898086
CRNKL1_chr20_20029368_20057466	1/1	c0001	2064	410	82	64	202	16	44	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0002	2064	7	7	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0003	2064	2	0	0	2	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0004	2064	2	0	2	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0005	2064	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0006	2064	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0007	2064	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0008	2043	1	0	0	1	0	0	copy fasta	CRNKL1	chr20	20029368	20057466