JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRNKL1_chr20_20029368_20057466	0/0	c0009	2064	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0010	2064	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNKL1_chr20_20029368_20057466	0/0	c0011	2064	1	1	0	0	0	0	copy fasta	CRNKL1	chr20	20029368	20057466
CRNN_chr1_152404243_152419263	1/1	c0001	1488	209	44	38	98	5	22	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0002	1488	130	10	32	79	1	8	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0003	1488	23	23	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0004	1488	10	10	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0005	1488	5	0	0	5	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0006	1488	3	3	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0007	1488	2	2	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0008	1488	2	0	2	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0009	1488	1	0	1	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0010	1488	1	0	0	1	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0011	1488	1	0	1	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0012	1488	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0013	1488	1	0	0	1	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0014	1488	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0015	1488	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CRNN_chr1_152404243_152419263	0/0	c0016	1488	1	1	0	0	0	0	copy fasta	CRNN	chr1	152404243	152419263
CROCC2_chr2_240901336_240998311	0/0	c0001	4962	51	15	9	22	0	5	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0002	4962	41	6	12	13	3	7	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0003	4962	26	5	6	5	5	5	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	1/0	c0004	4962	21	1	6	0	4	9	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0005	4962	19	3	7	4	0	5	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0006	4962	17	0	1	13	0	3	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0007	4962	16	1	2	13	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0008	4962	16	4	5	5	0	2	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0009	4962	15	0	0	15	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0010	4962	14	0	1	13	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0011	4962	6	0	0	6	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0012	4962	5	0	1	0	4	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0013	4962	5	5	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0014	4962	4	4	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0015	4962	3	2	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0016	4962	3	3	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0017	4962	3	3	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0018	4962	2	0	0	2	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0019	4963	2	0	0	2	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0020	4962	2	2	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0021	4962	2	0	2	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0022	4962	2	0	0	2	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0023	4962	2	2	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0024	4962	2	1	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0025	4962	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0026	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0027	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0028	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0029	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0030	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0031	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311