JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CROCC2_chr2_240901336_240998311	0/0	c0082	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0083	4962	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0084	4962	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0085	4962	1	0	0	0	0	1	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0086	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0087	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0088	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0089	4962	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0090	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0091	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0092	4962	1	1	0	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0093	4962	1	0	1	0	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0094	4962	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC2_chr2_240901336_240998311	0/0	c0095	4962	1	0	0	1	0	0	copy fasta	CROCC2	chr2	240901336	240998311
CROCC_chr1_16916931_16977964	0/0	c0001	6054	51	1	19	28	2	1	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0002	6054	44	3	12	21	2	6	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/1	c0003	6054	42	6	11	15	3	6	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0004	6054	7	0	1	3	0	3	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0005	6054	6	4	0	0	1	1	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0006	6054	6	3	3	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0007	6054	6	0	3	0	2	1	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0008	6054	6	0	0	6	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0009	6054	4	4	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0010	6054	4	4	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0011	6054	3	3	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0012	6054	3	3	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0013	6054	3	1	0	2	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0014	6054	3	2	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0015	6054	2	0	0	0	0	2	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0016	6054	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0017	6054	2	1	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0018	6054	2	1	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0019	6054	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0020	6054	2	2	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0021	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0022	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0023	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0024	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0025	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0026	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0027	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0028	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0029	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0030	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0031	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0032	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0033	6054	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0034	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0035	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0036	6054	1	0	0	0	0	1	copy fasta	CROCC	chr1	16916931	16977964