JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CROCC_chr1_16916931_16977964	0/0	c0037	6054	1	0	0	0	0	1	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0038	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	1/0	c0039	6054	1	0	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0040	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0041	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0042	6054	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0043	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0044	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0045	6054	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0046	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0047	6054	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0048	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0049	6054	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0050	6054	1	1	0	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0051	6054	1	0	0	1	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROCC_chr1_16916931_16977964	0/0	c0052	6054	1	0	1	0	0	0	copy fasta	CROCC	chr1	16916931	16977964
CROT_chr7_87340664_87404794	1/1	c0001	1839	251	77	41	106	9	16	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0002	1839	22	10	2	0	2	8	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0003	1839	3	0	3	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0004	1839	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0005	1839	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0006	1839	1	0	0	0	1	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0007	1839	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0008	1839	1	1	0	0	0	0	copy fasta	CROT	chr7	87340664	87404794
CROT_chr7_87340664_87404794	0/0	c0009	1839	1	0	0	1	0	0	copy fasta	CROT	chr7	87340664	87404794
CRPPA_chr7_16082525_16426538	1/0	c0001	1356	199	54	26	96	6	16	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/1	c0002	1356	72	16	14	29	2	10	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0003	1356	5	5	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0004	1356	4	3	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0005	1356	3	0	0	3	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0006	1356	3	3	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0007	1356	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0008	1356	1	1	0	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0009	1356	1	0	0	1	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRPPA_chr7_16082525_16426538	0/0	c0010	1356	1	0	1	0	0	0	copy fasta	CRPPA	chr7	16082525	16426538
CRP_chr1_159707289_159719589	1/1	c0001	675	410	95	76	187	12	38	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	c0002	675	15	1	3	9	2	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	c0003	675	6	0	0	6	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	c0004	675	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	c0005	675	1	1	0	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRP_chr1_159707289_159719589	0/0	c0006	675	1	0	1	0	0	0	copy fasta	CRP	chr1	159707289	159719589
CRTAC1_chr10_97860000_98035621	1/0	c0001	1986	124	49	15	41	2	16	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0002	1986	22	5	6	3	2	6	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0003	1986	19	8	2	8	1	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0004	1986	14	13	1	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0005	1986	6	1	2	0	1	2	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/1	c0006	1986	5	2	0	0	1	1	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0007	1986	3	1	2	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0008	1986	2	0	1	0	1	0	copy fasta	CRTAC1	chr10	97860000	98035621
CRTAC1_chr10_97860000_98035621	0/0	c0009	1986	1	0	1	0	0	0	copy fasta	CRTAC1	chr10	97860000	98035621