JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRTC1_chr19_18678680_18787333	0/0	c0007	1905	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0008	1905	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0009	1905	1	0	1	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC1_chr19_18678680_18787333	0/0	c0010	1905	1	1	0	0	0	0	copy fasta	CRTC1	chr19	18678680	18787333
CRTC2_chr1_153942675_153963612	1/1	c0001	2082	248	65	44	97	10	30	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0002	2082	104	10	26	58	1	9	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0003	2082	5	0	0	5	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0004	2082	4	0	0	4	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0005	2082	2	0	0	2	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0006	2082	2	0	0	0	0	2	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0007	2082	1	1	0	0	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0008	2082	1	0	0	0	0	1	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0009	2082	1	0	0	1	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0010	2082	1	0	0	0	1	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC2_chr1_153942675_153963612	0/0	c0011	2082	1	0	0	1	0	0	copy fasta	CRTC2	chr1	153942675	153963612
CRTC3_chr15_90524923_90650345	1/0	c0001	1860	157	44	35	61	5	11	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/1	c0002	1860	69	18	16	16	7	11	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0003	1861	24	5	7	10	0	2	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0004	1860	7	0	0	6	1	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0005	1861	5	3	1	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0006	1860	3	0	0	0	1	2	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0007	1860	2	0	0	2	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0008	1860	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0009	1860	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0010	1860	1	0	1	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0011	1860	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0012	1860	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0013	1861	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0014	1861	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0015	1860	1	1	0	0	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRTC3_chr15_90524923_90650345	0/0	c0016	1860	1	0	0	1	0	0	copy fasta	CRTC3	chr15	90524923	90650345
CRX_chr19_47816937_47848324	1/1	c0001	900	329	85	72	109	18	43	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0002	900	7	6	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0003	900	2	0	2	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0004	900	2	2	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0005	900	1	1	0	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0006	900	1	0	0	0	0	1	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0007	900	1	0	0	1	0	0	copy fasta	CRX	chr19	47816937	47848324
CRX_chr19_47816937_47848324	0/0	c0008	900	1	0	1	0	0	0	copy fasta	CRX	chr19	47816937	47848324
CRY1_chr12_106986364_107098549	0/0	c0001	1761	256	59	47	118	5	27	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	1/1	c0002	1761	57	12	14	15	3	11	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	c0003	1761	4	4	0	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	c0004	1761	1	1	0	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	c0005	1761	1	0	1	0	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY1_chr12_106986364_107098549	0/0	c0006	1761	1	0	0	1	0	0	copy fasta	CRY1	chr12	106986364	107098549
CRY2_chr11_45842475_45888244	1/1	c0001	1782	360	88	65	147	16	42	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	c0002	1782	4	4	0	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	c0003	1782	3	2	1	0	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRY2_chr11_45842475_45888244	0/0	c0004	1782	1	0	0	1	0	0	copy fasta	CRY2	chr11	45842475	45888244
CRYAA_chr21_43164008_43177805	0/0	c0001	522	16	1	3	3	2	7	copy fasta	CRYAA	chr21	43164008	43177805