JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYAA_chr21_43164008_43177805	0/0	c0002	522	14	7	1	2	4	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0003	523	2	0	1	1	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0004	523	2	1	1	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0005	545	1	0	0	1	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0006	522	1	1	0	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0007	522	1	1	0	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0008	522	1	1	0	0	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0009	522	1	0	0	1	0	0	copy fasta	CRYAA	chr21	43164008	43177805
CRYAA_chr21_43164008_43177805	0/0	c0010	561	1	0	0	0	0	1	copy fasta	CRYAA	chr21	43164008	43177805
CRYAB_chr11_111903564_111916770	1/1	c0001	528	385	93	79	166	7	38	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0002	528	4	0	3	0	0	1	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0003	528	3	0	0	0	0	3	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0004	528	1	1	0	0	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0005	528	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0006	528	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0007	528	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0008	528	1	0	0	1	0	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYAB_chr11_111903564_111916770	0/0	c0009	528	1	0	0	0	1	0	copy fasta	CRYAB	chr11	111903564	111916770
CRYBA1_chr17_29241859_29259494	1/1	c0001	648	265	50	60	108	11	34	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	c0002	648	126	37	14	60	3	12	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	c0003	648	1	0	1	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	c0004	648	1	1	0	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA1_chr17_29241859_29259494	0/0	c0005	648	1	0	1	0	0	0	copy fasta	CRYBA1	chr17	29241859	29259494
CRYBA2_chr2_218985190_218998422	1/1	c0001	594	384	92	73	168	5	44	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	c0002	594	2	2	0	0	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	c0003	594	2	0	1	0	1	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	c0004	594	1	0	0	1	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA2_chr2_218985190_218998422	0/0	c0005	594	1	0	0	1	0	0	copy fasta	CRYBA2	chr2	218985190	218998422
CRYBA4_chr22_26616963_26635669	0/1	c0001	591	372	85	63	183	11	29	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBA4_chr22_26616963_26635669	1/0	c0002	591	20	6	9	0	3	1	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBA4_chr22_26616963_26635669	0/0	c0003	591	6	0	6	0	0	0	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBA4_chr22_26616963_26635669	0/0	c0004	591	3	3	0	0	0	0	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBA4_chr22_26616963_26635669	0/0	c0005	591	1	0	0	1	0	0	copy fasta	CRYBA4	chr22	26616963	26635669
CRYBB1_chr22_26594278_26623027	1/1	c0001	759	423	88	77	200	14	42	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	c0002	773	1	0	0	1	0	0	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	c0003	759	1	0	1	0	0	0	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB1_chr22_26594278_26623027	0/0	c0004	759	1	0	0	1	0	0	copy fasta	CRYBB1	chr22	26594278	26623027
CRYBB2_chr22_25214639_25236869	1/1	c0001	618	284	64	63	112	12	31	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	c0002	618	161	26	20	94	4	17	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	c0003	618	14	0	0	14	0	0	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	c0004	618	3	2	1	0	0	0	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB2_chr22_25214639_25236869	0/0	c0005	618	2	2	0	0	0	0	copy fasta	CRYBB2	chr22	25214639	25236869
CRYBB3_chr22_25194858_25212359	0/1	c0001	636	332	40	61	187	10	33	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	1/0	c0002	636	110	48	21	17	7	16	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	c0003	636	6	4	1	0	0	1	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	c0004	636	2	2	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	c0005	636	1	0	1	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	c0006	636	1	1	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	c0007	636	1	1	0	0	0	0	copy fasta	CRYBB3	chr22	25194858	25212359
CRYBB3_chr22_25194858_25212359	0/0	c0008	636	1	0	0	0	1	0	copy fasta	CRYBB3	chr22	25194858	25212359