JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYBG1_chr6_106355717_106577017	0/1	c0001	6396	62	4	9	38	2	8	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0002	6396	22	0	0	21	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0003	6396	20	6	7	2	1	4	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0004	6396	20	1	6	6	2	5	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0005	6396	11	3	4	4	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0006	6396	10	4	0	6	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0007	6396	9	9	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	1/0	c0008	6396	6	1	3	0	1	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0009	6396	6	0	2	2	1	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0010	6396	5	0	4	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0011	6396	5	0	0	5	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0012	6396	4	4	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0013	6396	4	1	3	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0014	6396	4	0	0	4	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0015	6396	4	4	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0016	6396	3	3	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0017	6396	3	3	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0018	6396	3	3	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0019	6396	2	2	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0020	6396	2	2	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0021	6396	2	0	0	2	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0022	6396	2	2	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0023	6396	2	1	1	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0024	6396	2	0	2	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0025	6396	2	0	2	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0026	6396	2	2	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0027	6396	2	2	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0028	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0029	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0030	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0031	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0032	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0033	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0034	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0035	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0036	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0037	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0038	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0039	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0040	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0041	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0042	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0043	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0044	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0045	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0046	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0047	6396	1	0	1	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0048	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0049	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0050	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017