Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ADAMTS20_chr12_43348866_43557203	0/0	c0005	5733	9	1	0	7	0	1	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0006	5733	4	3	1	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0007	5733	4	4	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0008	5733	3	0	0	3	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0009	5733	3	2	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0010	5733	3	0	0	3	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0011	5733	2	0	2	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0012	5733	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0013	5733	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0014	5733	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0015	5733	2	2	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0016	5733	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0017	5733	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0018	5733	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0019	5733	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0020	5733	1	0	0	0	0	1	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0021	5733	1	0	0	0	0	1	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0022	5733	1	0	0	0	0	1	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0023	5733	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0024	5733	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0025	5733	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0026	5733	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0027	5733	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0028	5733	1	0	0	1	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0029	5733	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS20_chr12_43348866_43557203	0/0	c0030	5733	1	1	0	0	0	0	copy fasta	ADAMTS20	chr12	43348866	43557203
ADAMTS2_chr5_179105853_179350461	0/0	c0001	3636	25	8	3	10	1	3	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0002	3636	24	9	3	9	0	3	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0003	3639	16	1	3	10	0	2	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0004	3636	15	5	4	2	0	4	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0005	3639	9	0	1	7	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0006	3639	9	1	3	5	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0007	3636	8	0	0	5	1	2	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0008	3636	7	1	0	6	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0009	3636	6	0	1	3	1	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0010	3639	6	0	1	4	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0011	3636	5	0	1	3	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0012	3636	4	4	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0013	3636	4	0	3	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0014	3636	4	4	0	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0015	3636	4	0	2	1	1	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0016	3639	4	0	2	1	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0017	3636	3	0	0	2	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0018	3636	3	0	2	0	1	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0019	3636	3	0	2	0	0	1	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0020	3636	3	0	0	3	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0021	3636	3	0	1	2	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0022	3636	3	0	2	1	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0023	3636	2	0	0	2	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461
ADAMTS2_chr5_179105853_179350461	0/0	c0024	3636	2	1	1	0	0	0	copy fasta	ADAMTS2	chr5	179105853	179350461