JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYBG1_chr6_106355717_106577017	0/0	c0051	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0052	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0053	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0054	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0055	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0056	6396	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0057	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0058	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0059	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0060	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0061	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0062	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0063	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0064	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0065	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0066	6396	1	0	1	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0067	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0068	6396	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0069	6396	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0070	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0071	6396	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0072	6396	1	0	1	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0073	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0074	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0075	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0076	6396	1	1	0	0	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0077	6396	1	0	0	1	0	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0078	6396	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0079	6396	1	0	0	0	0	1	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG1_chr6_106355717_106577017	0/0	c0080	6396	1	0	0	0	1	0	copy fasta	CRYBG1	chr6	106355717	106577017
CRYBG2_chr1_26316865_26359130	1/0	c0001	4986	84	11	15	48	0	9	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0002	4935	81	7	20	47	2	5	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0003	4935	49	22	11	4	6	6	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/1	c0004	4986	43	10	5	21	0	6	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0005	4986	18	0	0	18	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0006	4935	10	7	3	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0007	4986	9	0	0	9	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0008	4935	8	6	0	1	1	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0009	4986	6	0	1	0	4	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0010	4986	5	0	3	0	0	2	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0011	4986	5	4	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0012	4935	4	3	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0013	4989	3	3	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0014	4986	3	1	2	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0015	4935	3	2	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0016	4986	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0017	4986	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0018	4935	2	1	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0019	4935	2	0	0	0	1	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0020	4935	2	2	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130