JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYBG2_chr1_26316865_26359130	0/0	c0021	4935	2	0	1	0	1	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0022	4986	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0023	4986	2	0	0	2	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0024	4986	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0025	4986	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0026	4986	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0027	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0028	4986	1	0	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0029	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0030	4986	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0031	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0032	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0033	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0034	4935	1	0	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0035	4935	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0036	4935	1	0	0	0	1	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0037	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0038	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0039	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0040	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0041	4935	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0042	4935	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0043	4986	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0044	4986	1	1	0	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0045	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0046	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0047	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0048	4986	1	0	1	0	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0049	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0050	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0051	4986	1	0	0	0	0	1	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG2_chr1_26316865_26359130	0/0	c0052	4986	1	0	0	1	0	0	copy fasta	CRYBG2	chr1	26316865	26359130
CRYBG3_chr3_97817011_97949984	1/0	c0001	8913	74	27	15	19	3	9	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0002	8913	59	5	18	22	5	9	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0003	8913	55	11	12	22	3	7	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0004	8913	37	6	8	20	2	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0005	8913	7	6	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0006	8913	7	0	1	5	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0007	8913	6	3	0	3	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0008	8913	5	5	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0009	8913	4	4	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0010	8913	3	0	2	0	1	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0011	8913	3	0	0	3	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0012	8913	3	2	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0013	8913	3	3	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0014	8913	3	0	0	3	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0015	8913	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0016	8913	2	0	0	0	2	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0017	8913	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0018	8913	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984