JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYBG3_chr3_97817011_97949984	0/0	c0019	8913	2	2	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0020	8913	2	0	0	0	0	2	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0021	8913	2	0	0	2	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0022	8913	2	0	0	2	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0023	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0024	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0025	8913	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0026	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0027	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/1	c0028	8913	1	0	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0029	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0030	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0031	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0032	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0033	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0034	8913	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0035	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0036	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0037	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0038	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0039	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0040	8913	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0041	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0042	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0043	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0044	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0045	8913	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0046	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0047	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0048	8913	1	0	1	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0049	8913	1	0	0	0	0	1	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0050	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0051	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0052	8913	1	0	0	1	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYBG3_chr3_97817011_97949984	0/0	c0053	8913	1	1	0	0	0	0	copy fasta	CRYBG3	chr3	97817011	97949984
CRYGA_chr2_208155740_208168589	1/1	c0001	525	384	92	70	159	18	43	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0002	525	3	0	3	0	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0003	525	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0004	525	1	1	0	0	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0005	525	1	0	1	0	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0006	525	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0007	525	1	1	0	0	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0008	525	1	0	0	1	0	0	copy fasta	CRYGA	chr2	208155740	208168589
CRYGA_chr2_208155740_208168589	0/0	c0009	525	1	0	0	0	0	1	copy fasta	CRYGA	chr2	208155740	208168589
CRYGB_chr2_208137573_208151158	1/0	c0001	528	154	33	33	71	7	9	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/1	c0002	528	145	38	16	58	8	24	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	c0003	528	108	23	20	54	1	10	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	c0004	528	3	3	0	0	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	c0005	528	1	0	0	1	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	c0006	528	1	0	0	0	0	1	copy fasta	CRYGB	chr2	208137573	208151158