JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
CRYGB_chr2_208137573_208151158	0/0	c0007	528	1	1	0	0	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGB_chr2_208137573_208151158	0/0	c0008	528	1	0	1	0	0	0	copy fasta	CRYGB	chr2	208137573	208151158
CRYGC_chr2_208123137_208134828	1/1	c0001	525	427	93	69	204	15	44	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0002	525	6	6	0	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0003	525	4	0	0	4	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0004	525	3	0	1	0	1	1	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0005	525	1	0	1	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0006	525	1	0	1	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0007	525	1	1	0	0	0	0	copy fasta	CRYGC	chr2	208123137	208134828
CRYGC_chr2_208123137_208134828	0/0	c0008	525	1	0	0	0	0	1	copy fasta	CRYGC	chr2	208123137	208134828
CRYGD_chr2_208116607_208129524	0/1	c0001	525	173	63	25	52	7	25	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	c0002	525	161	23	37	85	5	11	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	c0003	525	107	8	12	74	3	10	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	1/0	c0004	525	7	5	1	0	0	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	c0005	525	2	1	0	1	0	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	c0006	525	2	0	0	2	0	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	c0007	525	1	0	1	0	0	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGD_chr2_208116607_208129524	0/0	c0008	525	1	0	0	0	1	0	copy fasta	CRYGD	chr2	208116607	208129524
CRYGN_chr7_151423832_151445141	1/1	c0001	549	293	64	68	113	15	31	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0002	549	106	6	4	80	3	13	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0003	549	33	17	0	14	0	2	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0004	549	8	7	1	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0005	549	4	4	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0006	549	2	0	0	0	0	2	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0007	549	2	1	1	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0008	549	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0009	549	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0010	549	1	0	0	1	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGN_chr7_151423832_151445141	0/0	c0011	549	1	1	0	0	0	0	copy fasta	CRYGN	chr7	151423832	151445141
CRYGS_chr3_186533443_186549380	1/1	c0001	537	386	88	75	165	16	40	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0002	537	2	1	1	0	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0003	537	2	0	0	0	2	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0004	537	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0005	537	1	1	0	0	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0006	537	1	1	0	0	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0007	537	1	1	0	0	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0008	537	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYGS_chr3_186533443_186549380	0/0	c0009	537	1	0	0	1	0	0	copy fasta	CRYGS	chr3	186533443	186549380
CRYL1_chr13_20398669_20530857	1/0	c0001	960	148	31	29	73	4	10	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/1	c0002	960	65	41	8	5	2	8	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	c0003	960	28	13	6	3	2	4	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	c0004	960	5	2	0	3	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	c0005	960	2	2	0	0	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	c0006	960	1	1	0	0	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYL1_chr13_20398669_20530857	0/0	c0007	960	1	0	1	0	0	0	copy fasta	CRYL1	chr13	20398669	20530857
CRYM_chr16_21253521_21283290	1/1	c0001	945	195	13	32	114	7	27	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	c0002	945	191	65	29	73	7	17	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	c0003	945	5	5	0	0	0	0	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	c0004	945	1	1	0	0	0	0	copy fasta	CRYM	chr16	21253521	21283290
CRYM_chr16_21253521_21283290	0/0	c0005	945	1	0	0	1	0	0	copy fasta	CRYM	chr16	21253521	21283290